PDBsum entry 3pym

Oxidoreductase

PDB id: 3pym

Contents

Protein chains

332 a.a.

Ligands

NAD ×2

MRY ×2

Metals

_NA

Waters ×492

PDB id:

3pym

Name:

Oxidoreductase

Title:

Structure of gapdh 3 from s.Cerevisiae at 2.0 a resolution

Structure:

Glyceraldehyde-3-phosphate dehydrogenase 3. Chain: a, b. Synonym: gapdh 3. Ec: 1.2.1.12

Source:

Saccharomyces cerevisiae. Brewer's yeast,lager beer yeast,yeast. Organism_taxid: 4932

Resolution:

2.00Å R-factor: 0.152 R-free: 0.189

Authors:

I.Garcia-Saez,F.Kozielski,D.Job,C.Boscheron

Date:

13-Dec-10 Release date: 11-Jan-12

Protein chains

P00359  (G3P3_YEAST) -  Glyceraldehyde-3-phosphate dehydrogenase 3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

Seq: 332 a.a.

Struc: 332 a.a.

Enzyme reactions

• Enzyme class: E.C.1.2.1.12 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating).
• Pathway: Glyceraldehyde-3-phosphate Dehydrogenase (phosphorylating)
• Reaction: D-glyceraldehyde 3-phosphate + phosphate + NAD⁺ = (2R)-3-phospho- glyceroyl phosphate + NADH + H⁺

D-glyceraldehyde 3-phosphate (Bound ligand (Het Group name = MRY) matches with 50.00% similarity) + phosphate (Bound ligand (Het Group name = NAD) corresponds exactly) + NAD(+) = (2R)-3-phospho- glyceroyl phosphate + NADH + H(+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site