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PDBsum entry 3ize
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PDB id:
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Ribosome
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Title:
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Model of the small subunit RNA based on a 6.1 a cryo-em map saccharomyces cerevisiae translating 80s ribosome
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Structure:
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18s rrna. Chain: a. P-site tRNA asp. Chain: b. mRNA, RNA (5'-r(p Ap Ap Ap Ap Gp Ap Cp Up Up Cp A chain: c
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Source:
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Saccharomyces cerevisiae. Yeast. Organism_taxid: 4932. Organism_taxid: 4932
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Authors:
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J.-P.Armache,A.Jarasch,A.M.Anger,E.Villa,T.Becker,S.Bhushan, F.Jossinet,M.Habeck,G.Dindar,S.Franckenberg,V.Marquez,T.Mie M.Thomm,O.Berninghausen,B.Beatrix,J.Soeding,E.Westhof,D.N.W R.Beckmann
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Key ref:
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J.P.Armache
et al.
(2010).
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proc Natl Acad Sci U S A,
107,
19748-19753.
PubMed id:
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Date:
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13-Oct-10
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Release date:
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01-Dec-10
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U-A-U-C-U-G-G-U-U-G-A-U-C-C-U-G-C-C-A-G-U-A-G-U-C-A-U-A-U-G-C-U-U-G-U-C-U-C-A-
...
1721 bases
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U-C-C-G-U-G-A-U-A-G-U-U-U-A-A-U-G-G-U-C-A-G-A-A-U-G-G-G-C-G-C-U-U-G-U-C-G-C-G-
75 bases
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A-A-A-A-G-A-C-U-U-C-A
11 bases
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Proc Natl Acad Sci U S A
107:19748-19753
(2010)
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PubMed id:
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Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
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J.P.Armache,
A.Jarasch,
A.M.Anger,
E.Villa,
T.Becker,
S.Bhushan,
F.Jossinet,
M.Habeck,
G.Dindar,
S.Franckenberg,
V.Marquez,
T.Mielke,
M.Thomm,
O.Berninghausen,
B.Beatrix,
J.Söding,
E.Westhof,
D.N.Wilson,
R.Beckmann.
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ABSTRACT
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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C.Leidig,
G.Bange,
J.Kopp,
S.Amlacher,
A.Aravind,
S.Wickles,
G.Witte,
E.Hurt,
R.Beckmann,
and
I.Sinning
(2013).
Structural characterization of a eukaryotic chaperone-the ribosome-associated complex.
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Nat Struct Mol Biol,
20,
23-28.
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PDB codes:
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Y.Hashem,
A.des Georges,
J.Fu,
S.N.Buss,
F.Jossinet,
A.Jobe,
Q.Zhang,
H.Y.Liao,
R.A.Grassucci,
C.Bajaj,
E.Westhof,
S.Madison-Antenucci,
and
J.Frank
(2013).
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome.
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Nature,
494,
385-389.
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PDB codes:
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B.Bradatsch,
C.Leidig,
S.Granneman,
M.Gnädig,
D.Tollervey,
B.Böttcher,
R.Beckmann,
and
E.Hurt
(2012).
Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel.
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Nat Struct Mol Biol,
19,
1234-1241.
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PDB code:
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S.Melnikov,
A.Ben-Shem,
N.Garreau de Loubresse,
L.Jenner,
G.Yusupova,
and
M.Yusupov
(2012).
One core, two shells: bacterial and eukaryotic ribosomes.
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Nat Struct Mol Biol,
19,
560-567.
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T.Becker,
S.Franckenberg,
S.Wickles,
C.J.Shoemaker,
A.M.Anger,
J.P.Armache,
H.Sieber,
C.Ungewickell,
O.Berninghausen,
I.Daberkow,
A.Karcher,
M.Thomm,
K.P.Hopfner,
R.Green,
and
R.Beckmann
(2012).
Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
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Nature,
482,
501-506.
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PDB codes:
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D.N.Wilson,
and
R.Beckmann
(2011).
The ribosomal tunnel as a functional environment for nascent polypeptide folding and translational stalling.
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Curr Opin Struct Biol,
21,
274-282.
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J.Rabl,
M.Leibundgut,
S.F.Ataide,
A.Haag,
and
N.Ban
(2011).
Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1.
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Science,
331,
730-736.
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PDB codes:
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N.Kondrashov,
A.Pusic,
C.R.Stumpf,
K.Shimizu,
A.C.Hsieh,
S.Xue,
J.Ishijima,
T.Shiroishi,
and
M.Barna
(2011).
Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning.
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Cell,
145,
383-397.
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T.Becker,
J.P.Armache,
A.Jarasch,
A.M.Anger,
E.Villa,
H.Sieber,
B.A.Motaal,
T.Mielke,
O.Berninghausen,
and
R.Beckmann
(2011).
Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome.
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Nat Struct Mol Biol,
18,
715-720.
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PDB code:
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V.Ramakrishnan
(2011).
Molecular biology. The eukaryotic ribosome.
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Science,
331,
681-682.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
codes are
shown on the right.
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