PDBsum entry 3ize Go to PDB code:  Tunnel analysis for: 3ize calculated with MOLE 2.0 PDB id 3ize Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   31 tunnels, coloured by tunnel radius 31 tunnels, coloured by tunnel radius 31 tunnels, coloured as in list below Tunnels Length Hydropathy Hydrophobicity Polarity Mutability Residue..type Ligands Radius 1 1.26 81.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  10 G A,1145 U A,1146 G A,1147 A A,1159 C A,1160 A A,1164 G A,1165 G A,1166 A A,1167 G A,1192 C A, 1193 A A,1197 C A,1282 U A,1283 U A,1289 U A,1290 U A,1424 A A,1426 C A,1466 G A,1579 U A,1580 C A, 1581 C A,1582 U A,1586 A A,1587 A A,1604 U A,1611 A A,1612 U A,1613 U A,1622 G A,1623 C A,1635 A A 2 1.26 87.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1164 G A,1165 G A,1166 A A,1167 G A,1466 G A,1467 C A,1468 U A,1474 G A,1476 C A,1477 G A,1505 A A, 1525 A A,1526 A A,1527 C A,1528 U A,1529 C A,1530 C A,1533 C A,1562 G A,1563 C A,1579 U A,1580 C A, 1581 C A,1582 U A,1586 A A,1587 A A,1588 G A,1589 C A,1590 G A,1591 C A,1601 G A,1604 U A,1611 A A, 1612 U A,1613 U A 3 1.26 102.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1153 G A,1154 G A,1155 G A,1156 C A,1157 A A,1158 C A,1159 C A,1164 G A,1165 G A,1166 A A,1167 G A, 1197 C A,1282 U A,1285 U A,1286 U A,1308 G A,1309 C A,1310 U A,1311 U A,1312 A A,1403 C A,1404 C A, 1413 U A,1416 G A,1417 A A,1418 G A,1419 G A,1466 G A,1579 U A,1580 C A,1581 C A,1582 U A,1586 A A, 1587 A A,1604 U A,1611 A A,1612 U A,1613 U A,1614 A A,1615 C A,1616 G A,1626 U A,1627 U A 4 1.26 117.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1164 G A,1165 G A,1166 A A,1167 G A,1173 C A,1174 C A,1175 U A,1176 G A,1177 C A,1178 G A,1179 G A, 1180 C A,1181 U A,1182 U A,1184 A A,1185 U A,1187 U A,1456 C A,1458 G A,1459 C A,1460 A A,1466 G A, 1467 C A,1468 U A,1543 A A,1544 U A,1545 A A,1558 U A,1559 A A,1560 U A,1561 U A,1562 G A,1579 U A, 1580 C A,1581 C A,1582 U A,1586 A A,1587 A A,1588 G A,1589 C A,1590 G A,1591 C A,1600 A A,1601 G A, 1604 U A,1611 A A,1612 U A,1613 U A 5 1.69 13.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  211 U A,212 U A,213 A A,246 G A,737 A A,828 U A, 829 A A,844 A A,845 G A 6 1.60 22.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  208 U A,215 A A,216 U A,217 A A,829 A A,830 U A, 831 U A,832 U A,837 G A,838 G A,839 U A 7 1.68 22.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  212 U A,213 A A,697 C A,698 U A,736 C A,737 A A, 828 U A,829 A A,844 A A 8 1.60 24.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  215 A A,216 U A,217 A A,827 C A,828 U A,829 A A, 830 U A,831 U A,832 U A,837 G A,838 G A,839 U A, 840 U A 9 1.60 26.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  208 U A,209 U A,211 U A,215 A A,216 U A,217 A A, 829 A A,830 U A,831 U A,832 U A,837 G A,838 G A, 839 U A 10 1.60 27.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  215 A A,216 U A,217 A A,826 U A,827 C A,828 U A, 829 A A,830 U A,831 U A,832 U A,837 G A,838 G A, 839 U A,840 U A,841 U A 11 1.60 29.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  209 U A,210 A A,211 U A,215 A A,216 U A,217 A A, 238 U A,239 C A,830 U A,831 U A,832 U A,833 U A, 836 U A,837 G A,838 G A,839 U A 12 1.59 31.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  207 U A,208 U A,209 U A,215 A A,216 U A,217 A A, 241 U A,830 U A,831 U A,832 U A,833 U A,835 U A, 836 U A,837 G A,838 G A,839 U A 13 2.18 14.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 G B,7 A B,16 U B,48 C B,60 C B,61 C B,63 C B 14 2.72 17.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 A B,46 A B,48 C B,49 G B,50 G B,51 G B,57 A B, 58 U B,59 U B 15 2.17 18.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 U B,6 G B,7 A B,48 C B,61 C B,62 C B,63 C B 16 2.17 25.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 U B,2 C B,3 C B,4 G B,5 U B,6 G B,7 A B,48 C B, 62 C B,63 C B,64 G B,65 U B,66 C B 17 1.53 29.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  7 A B,8 U B,11 U B,12 U B,13 U B,15 A B,47 U B,48 C B 18 1.80 6.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  9 A B,10 G B,27 G B,28 G B,44 A B 19 2.15 7.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  9 A B,22 G B,43 C B,44 A B,45 G B 20 1.90 10.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  9 A B,22 G B,23 A B,43 C B,44 A B 21 1.99 12.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  9 A B,23 A B,24 A B,25 U B,42 C B,43 C B,44 A B 22 1.45 12.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  9 A B,23 A B,24 A B,42 C B,43 C B,44 A B 23 1.52 17.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  186 C A,220 A A,221 A A,230 C A,231 U A,232 U A 24 1.29 24.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  217 A A,218 A A,220 A A,221 A A,222 A A,228 G A, 232 U A,233 C A,234 G A,832 U A,833 U A,834 G A, 835 U A,837 G A 25 1.30 16.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1220 C A,1221 A A,1222 C A,1224 A A,1258 U A,1259 U A,1263 G A,1264 G A,1265 G A,1444 A A 26 1.30 18.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  444 C A,445 A A,446 A A,447 U A,448 C A,455 C A, 456 A A,457 G A,461 G A 27 3.97 4.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  177 U A,178 U A,179 A A,180 A A,190 C A,195 G A 28 1.98 6.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  645 C A,646 C A,686 C A,687 G A,688 G A,789 A A 29 3.30 4.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  981 U A,982 U A,1020 A A,1123 C A 30 1.60 6.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1503 A A,1504 G A,1548 G A,1549 C A,1563 C A,1564 U A 31 1.29 8.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  318 U A,319 U A,323 A A,345 U A,346 G A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.