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PDBsum entry 3lm4

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protein ligands metals Protein-protein interface(s) links
Oxidoreductase PDB id
3lm4

 

 

 

 

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Contents
Protein chains
325 a.a. *
Ligands
PEO ×4
HPX ×4
Metals
_FE ×4
Waters ×748
* Residue conservation analysis
PDB id:
3lm4
Name: Oxidoreductase
Title: Crystal structure of 2,3-dihydroxy biphenyl dioxygenase from rhodococcus sp. (Strain rha1)
Structure: Catechol 2,3-dioxygenase. Chain: a, b, c, d. Synonym: 2,3-dihydroxy biphenyl dioxygenase. Engineered: yes
Source: Rhodococcus jostii. Organism_taxid: 101510. Strain: rha1. Expressed in: escherichia coli. Expression_system_taxid: 469008.
Resolution:
1.80Å     R-factor:   0.184     R-free:   0.210
Authors: B.Syed Ibrahim,D.Kumaran,S.K.Burley,S.Swaminathan,New York Sgx Research Center For Structural Genomics (Nysgxrc)
Key ref: B.Syed ibrahim et al. Crystal structure of 2,3-Dihydroxy biphenyl dioxygenase from rhodococcus sp. (Strain rha1). To be published, .
Date:
29-Jan-10     Release date:   23-Feb-10    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q0S9X1  (Q0S9X1_RHOJR) -  Catechol 2,3-dioxygenase from Rhodococcus jostii (strain RHA1)
Seq:
Struc:
360 a.a.
325 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.1.13.11.2  - catechol 2,3-dioxygenase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: catechol + O2 = (2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate + H+
catechol
Bound ligand (Het Group name = HPX)
matches with 50.00% similarity
+
O2
Bound ligand (Het Group name = PEO)
corresponds exactly
= (2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoate
+ H(+)
      Cofactor: Fe(2+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

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