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PDBsum entry 2fj2
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* Residue conservation analysis
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PDB id:
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Chemokine
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Title:
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Crystal structure of viral macrophage inflammatory protein-ii
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Structure:
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Viral macrophage inflammatory protein-ii. Chain: a, b, c, d. Synonym: vmip-ii, vmip- 1b. Engineered: yes
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Source:
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Synthetic: yes. Other_details: sequence occurs in kaposi's sarcoma herpes virus-8
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Resolution:
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2.30Å
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R-factor:
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0.257
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R-free:
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0.301
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Authors:
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Y.Li,D.Liu,R.Cao,S.Kumar,C.Z.Dong,S.R.Wilson,Y.G.Gao,Z.Huang
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Key ref:
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Y.Li
et al.
(2007).
Crystal structure of chemically synthesized vMIP-II.
Proteins,
67,
243-246.
PubMed id:
DOI:
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Date:
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30-Dec-05
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Release date:
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26-Dec-06
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PROCHECK
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Headers
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References
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Q98157
(VMI2_HHV8P) -
Viral macrophage inflammatory protein 2 from Human herpesvirus 8 type P (isolate GK18)
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Seq:
Struc:
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94 a.a.
68 a.a.
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Key: |
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PfamA domain |
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Secondary structure |
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CATH domain |
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DOI no:
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Proteins
67:243-246
(2007)
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PubMed id:
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Crystal structure of chemically synthesized vMIP-II.
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Y.Li,
D.Liu,
R.Cao,
S.Kumar,
C.Dong,
J.An,
S.R.Wilson,
Y.G.Gao,
Z.Huang.
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ABSTRACT
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Selected figure(s)
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Figure 1.
Figure 1. (A) The structural diagram of vMIP-II monomer
containing residues 4-71 (tetragonal crystal form). (B) The
residues 11-16 of vMIP-II monomer in tetragonal crystal form
with 2F[o]-F[c] electron density map contoured at 1.0  .
The figure was produced by program O.[11] (C) The solvent
accessible surface of vMIP-II (this work), MIP-1  (PDB
code 1B53), MIP-1  (PDB
code 1HUM), RANTES (PDB code 1B3A), and MCP-2 (PDB code 1ESR).
The surfaces are colored according to surface electrostatic
potential calculated by DelPhi.[13] Red color represents
negative electrical potential and blue color represents positive
electrical potential. The N-loop regions of each structure were
circled. (D) Sequence alignment of vMIP-II, MIP-1 ,
MIP-1 ,
RANTES, and MCP-2. The N-loop loop region is represented in bold
letters.
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The above figure is
reprinted
by permission from John Wiley & Sons, Inc.:
Proteins
(2007,
67,
243-246)
copyright 2007.
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Literature references that cite this PDB file's key reference
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PubMed id
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Reference
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S.H.Bae,
H.J.Dyson,
and
P.E.Wright
(2009).
Prediction of the rotational tumbling time for proteins with disordered segments.
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J Am Chem Soc,
131,
6814-6821.
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D.Liu,
N.Madani,
Y.Li,
R.Cao,
W.T.Choi,
S.P.Kawatkar,
M.Y.Lim,
S.Kumar,
C.Z.Dong,
J.Wang,
J.D.Russell,
C.R.Lefebure,
J.An,
S.Wilson,
Y.G.Gao,
L.A.Pallansch,
J.G.Sodroski,
and
Z.Huang
(2007).
Crystal structure and structural mechanism of a novel anti-human immunodeficiency virus and D-amino acid-containing chemokine.
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J Virol,
81,
11489-11498.
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The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
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Links
