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PDBsum entry 1u5q

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protein metals Protein-protein interface(s) links
Transferase PDB id
1u5q

 

 

 

 

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Contents
Protein chains
309 a.a. *
Metals
_CA ×2
Waters ×434
* Residue conservation analysis
PDB id:
1u5q
Name: Transferase
Title: Crystal structure of the tao2 kinase domain: activation and specifity of a ste20p map3k
Structure: Serine/threonine protein kinase tao2. Chain: a, b. Fragment: n-terminal kinase domain. Engineered: yes
Source: Rattus norvegicus. Norway rat. Organism_taxid: 10116. Gene: serine/threonine protein kinase tao2. Expressed in: spodoptera frugiperda. Expression_system_taxid: 7108. Expression_system_cell_line: sf9.
Resolution:
2.10Å     R-factor:   0.223     R-free:   0.269
Authors: T.Zhou,M.Raman,Y.Gao,S.Earnest,Z.Chen,M.Machius,M.H.Cobb, E.J.Goldsmith
Key ref:
T.Zhou et al. (2004). Crystal structure of the TAO2 kinase domain: activation and specificity of a Ste20p MAP3K. Structure, 12, 1891-1900. PubMed id: 15458637 DOI: 10.1016/j.str.2004.07.021
Date:
28-Jul-04     Release date:   12-Oct-04    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q9JLS3  (TAOK2_RAT) -  Serine/threonine-protein kinase TAO2 from Rattus norvegicus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1235 a.a.
309 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.11.1  - non-specific serine/threonine protein kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction:
1. L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H+
2. L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H+
L-seryl-[protein]
+ ATP
= O-phospho-L-seryl-[protein]
+ ADP
+ H(+)
L-threonyl-[protein]
+ ATP
= O-phospho-L-threonyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1016/j.str.2004.07.021 Structure 12:1891-1900 (2004)
PubMed id: 15458637  
 
 
Crystal structure of the TAO2 kinase domain: activation and specificity of a Ste20p MAP3K.
T.Zhou, M.Raman, Y.Gao, S.Earnest, Z.Chen, M.Machius, M.H.Cobb, E.J.Goldsmith.
 
  ABSTRACT  
 
TAO2 is a mitogen-activated protein kinase kinase kinase (MAP3K) that doubly phosphorylates and activates the MAP kinase kinases (MAP2Ks) MEK3 and MEK6. The structure of the kinase domain of TAO2 (1-320) has been solved in its phosphorylated active conformation. The structure, together with structure-based mutagenic analysis, reveals that positively charged residues in the substrate binding groove mediate the first step in the dual phosphorylation of MEK6, on the threonine residue in the motif DS*VAKT*I (*denotes phosphorylation site) of MEK6. TAO2 is a Ste20p homolog, and the structure of active TAO2, in comparison with that of low-activity p21-activated protein kinase (PAK1), a Ste20p-related MAP4K, reveals how this group of kinases is activated by phosphorylation. Finally, active TAO2 displays unusual interactions with ATP, involving, in part, a subgroup-specific C-terminal extension of TAO2. The observed interactions may be useful in making specific inhibitors of TAO kinases.
 
  Selected figure(s)  
 
Figure 1.
Figure 1. Overall Structure and Electron Density of TAO2 Kinase Domain(A) Ribbon diagram of TAO2 (1-320) in complex with MgATP. Phosphate binding ribbon is colored yellow, catalytic loop is orange, and activation loop is pink. b strands are green, conserved helices are blue, and additional helices are purple (aA and aB) or magenta (aJ and aK). pSer181 and MgATP molecules are shown in ball-and-stick representation.(B) Electron density of apo-TAO2 in the vicinity of the pSer181 and the P+1 pocket, contoured at 1.0 s and drawn on O (Jones et al., 1991). Phosphate atom is green, and ordered water molecules are red spheres. Figure 1, Figure 3, Figure 4, Figure 5 and Figure 6 were prepared using Molscript (Kraulis, 1991) and rendered using POV-Ray (Persistence of Vision Ray Tracer v3.1g, POV-Team).
 
  The above figure is reprinted by permission from Cell Press: Structure (2004, 12, 1891-1900) copyright 2004.  
  Figure was selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
19895503 T.Zhou, L.Commodore, W.S.Huang, Y.Wang, T.K.Sawyer, W.C.Shakespeare, T.Clackson, X.Zhu, and D.C.Dalgarno (2010).
Structural analysis of DFG-in and DFG-out dual Src-Abl inhibitors sharing a common vinyl purine template.
  Chem Biol Drug Des, 75, 18-28.
PDB codes: 3kf4 3kfa
19399514 E.Delpire (2009).
The mammalian family of sterile 20p-like protein kinases.
  Pflugers Arch, 458, 953-967.  
19513107 E.Zeqiraj, B.M.Filippi, S.Goldie, I.Navratilova, J.Boudeau, M.Deak, D.R.Alessi, and D.M.van Aalten (2009).
ATP and MO25alpha regulate the conformational state of the STRADalpha pseudokinase and activation of the LKB1 tumour suppressor.
  PLoS Biol, 7, e1000126.
PDB code: 3gni
  19088383 R.A.Falin, R.Morrison, A.J.Ham, and K.Strange (2009).
Identification of regulatory phosphorylation sites in a cell volume- and Ste20 kinase-dependent ClC anion channel.
  J Gen Physiol, 133, 29-42.  
19226137 R.Anand, J.Maksimoska, N.Pagano, E.Y.Wong, P.A.Gimotty, S.L.Diamond, E.Meggers, and R.Marmorstein (2009).
Toward the development of a potent and selective organoruthenium mammalian sterile 20 kinase inhibitor.
  J Med Chem, 52, 1602-1611.  
19177573 S.J.Lee, M.H.Cobb, and E.J.Goldsmith (2009).
Crystal structure of domain-swapped STE20 OSR1 kinase domain.
  Protein Sci, 18, 304-313.
PDB code: 3dak
20003365 T.Liu, and R.B.Altman (2009).
Prediction of calcium-binding sites by combining loop-modeling with machine learning.
  BMC Struct Biol, 9, 72.  
19120698 W.Wang, Y.Yang, Y.Gao, Q.Xu, F.Wang, S.Zhu, W.Old, K.Resing, N.Ahn, M.Lei, and X.Liu (2009).
Structural and mechanistic insights into Mps1 kinase activation.
  J Cell Mol Med, 13, 1679-1694.
PDB code: 3dbq
19141286 X.Min, R.Akella, H.He, J.M.Humphreys, S.E.Tsutakawa, S.J.Lee, J.A.Tainer, M.H.Cobb, and E.J.Goldsmith (2009).
The structure of the MAP2K MEK6 reveals an autoinhibitory dimer.
  Structure, 17, 96.
PDB code: 3enm
18275814 A.Merckx, A.Echalier, K.Langford, A.Sicard, G.Langsley, J.Joore, C.Doerig, M.Noble, and J.Endicott (2008).
Structures of P. falciparum protein kinase 7 identify an activation motif and leads for inhibitor design.
  Structure, 16, 228-238.
PDB codes: 2pmn 2pmo
18831043 F.Villa, M.Deak, D.R.Alessi, and D.M.van Aalten (2008).
Structure of the OSR1 kinase, a hypertension drug target.
  Proteins, 73, 1082-1087.
PDB code: 2vwi
18639460 J.Eswaran, M.Soundararajan, R.Kumar, and S.Knapp (2008).
UnPAKing the class differences among p21-activated kinases.
  Trends Biochem Sci, 33, 394-403.  
18995837 J.Kang, M.Yang, B.Li, W.Qi, C.Zhang, K.M.Shokat, D.R.Tomchick, M.Machius, and H.Yu (2008).
Structure and substrate recruitment of the human spindle checkpoint kinase Bub1.
  Mol Cell, 32, 394-405.
PDB codes: 3e7e 4r8q
17298288 C.Doerig, and L.Meijer (2007).
Antimalarial drug discovery: targeting protein kinases.
  Expert Opin Ther Targets, 11, 279-290.  
17912359 J.D.Knight, B.Qian, D.Baker, and R.Kothary (2007).
Conservation, variability and the modeling of active protein kinases.
  PLoS ONE, 2, e982.  
17292838 J.Eswaran, W.H.Lee, J.E.Debreczeni, P.Filippakopoulos, A.Turnbull, O.Fedorov, S.W.Deacon, J.R.Peterson, and S.Knapp (2007).
Crystal Structures of the p21-activated kinases PAK4, PAK5, and PAK6 reveal catalytic domain plasticity of active group II PAKs.
  Structure, 15, 201-213.
PDB codes: 2bva 2c30 2cdz 2f57
16407310 C.Zihni, C.Mitsopoulos, I.A.Tavares, A.J.Ridley, and J.D.Morris (2006).
Prostate-derived sterile 20-like kinase 2 (PSK2) regulates apoptotic morphology via C-Jun N-terminal kinase and Rho kinase-1.
  J Biol Chem, 281, 7317-7323.  
16382158 K.B.Gagnon, R.England, and E.Delpire (2006).
Characterization of SPAK and OSR1, regulatory kinases of the Na-K-2Cl cotransporter.
  Mol Cell Biol, 26, 689-698.  
16761096 T.J.Zhou, L.G.Sun, Y.Gao, and E.J.Goldsmith (2006).
Crystal structure of the MAP3K TAO2 kinase domain bound by an inhibitor staurosporine.
  Acta Biochim Biophys Sin (Shanghai), 38, 385-392.
PDB code: 2gcd
15893667 M.Lei, M.A.Robinson, and S.C.Harrison (2005).
The active conformation of the PAK1 kinase domain.
  Structure, 13, 769-778.
PDB codes: 1yhv 1yhw
16253996 Y.Du, B.C.Böck, K.A.Schachter, M.Chao, and K.A.Gallo (2005).
Cdc42 induces activation loop phosphorylation and membrane targeting of mixed lineage kinase 3.
  J Biol Chem, 280, 42984-42993.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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