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PDBsum entry 1lmm

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Toxin PDB id
1lmm

 

 

 

 

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Contents
Protein chain
40 a.a.
PDB id:
1lmm
Name: Toxin
Title: Solution structure of psmalmotoxin 1, the first characterized specific blocker of asic1a na+ channel
Structure: Psalmotoxin 1. Chain: a. Synonym: pctx1. Engineered: yes
Source: Psalmopoeus cambridgei. Trinidad chevron tarantula. Organism_taxid: 179874. Expressed in: escherichia coli. Expression_system_taxid: 562
NMR struc: 20 models
Authors: P.Escoubas,C.Bernard,M.Lazdunski,H.Darbon
Key ref:
P.Escoubas et al. (2003). Recombinant production and solution structure of PcTx1, the specific peptide inhibitor of ASIC1a proton-gated cation channels. Protein Sci, 12, 1332-1343. PubMed id: 12824480 DOI: 10.1110/ps.0307003
Date:
02-May-02     Release date:   25-Nov-03    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P60514  (TXP1_PSACA) -  Psalmotoxin-1 from Psalmopoeus cambridgei
Seq:
Struc:
40 a.a.
40 a.a.
Key:    PfamA domain  Secondary structure

 

 
DOI no: 10.1110/ps.0307003 Protein Sci 12:1332-1343 (2003)
PubMed id: 12824480  
 
 
Recombinant production and solution structure of PcTx1, the specific peptide inhibitor of ASIC1a proton-gated cation channels.
P.Escoubas, C.Bernard, G.Lambeau, M.Lazdunski, H.Darbon.
 
  ABSTRACT  
 
Acid-sensing ion channels (ASICs) are thought to be important ion channels, particularly for the perception of pain. Some of them may also contribute to synaptic plasticity, learning, and memory. Psalmotoxin 1 (PcTx1), the first potent and specific blocker of the ASIC1a proton-sensing channel, has been successfully expressed in the Drosophila melanogaster S2 cell recombinant expression system used here for the first time to produce a spider toxin. The recombinant toxin was identical in all respects to the native peptide, and its three-dimensional structure in solution was determined by means of (1)H 2D NMR spectroscopy. Surface characteristics of PcTx1 provide insights on key structural elements involved in the binding of PcTx1 to ASIC1a channels. They appear to be localized in the beta-sheet and the beta-turn linking the strands, as indicated by electrostatic anisotropy calculations, surface charge distribution, and the presence of residues known to be implicated in channel recognition by other inhibitor cystine knot (ICK) toxins.
 
  Selected figure(s)  
 
Figure 4.
Figure 4. (A) Stereoview of the best fit of 20 solution structures of PcTx1. C[ ]are shown. The N and C termini are labeled "N" and "C". (B) Molecular surface colored according to the electrostatic charge (red for acidic and blue for basic) and the resulting dipolar moment (red arrow). The aromatic residues are indicated and colored in purple. (C) CPK representation of the proposed functional surface of PcTx1. The residues suspected to be important for the interaction of the toxin with the channel are labeled. Residues are colored as follows: green for polar uncharged residues, blue for basic residues, red for acidic residues, purple for aromatic residues, and yellow for aliphatic residues.
Figure 6.
Figure 6. Comparison of putative functional dyads of PcTx1 (A) and related ICK toxins J-atracotoxin Hv1c (PDB 1DL0 [PDB] ; B), -conotoxin PVIIA (PDB 1KCP [PDB] ; C), and agitoxin 2 (PDB 1AGT [PDB] ; D). Basic residues side chains are colored in blue; aromatic residues side chains, in orange.
 
  The above figures are reprinted by permission from the Protein Society: Protein Sci (2003, 12, 1332-1343) copyright 2003.  
  Figures were selected by an automated process.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
22842900 I.Baconguis, and E.Gouaux (2012).
Structural plasticity and dynamic selectivity of acid-sensing ion channel-spider toxin complexes.
  Nature, 489, 400-405.
PDB codes: 4fz0 4fz1
21214860 A.H.Kwan, M.Mobli, P.R.Gooley, G.F.King, and J.P.Mackay (2011).
Macromolecular NMR spectroscopy for the non-spectroscopist.
  FEBS J, 278, 687-703.  
20177945 I.Vetter, J.L.Davis, L.D.Rash, R.Anangi, M.Mobli, P.F.Alewood, R.J.Lewis, and G.F.King (2011).
Venomics: a new paradigm for natural products-based drug discovery.
  Amino Acids, 40, 15-28.  
  21383888 S.Gründer, and X.Chen (2010).
Structure, function, and pharmacology of acid-sensing ion channels (ASICs): focus on ASIC1a.
  Int J Physiol Pathophysiol Pharmacol, 2, 73-94.  
20442265 T.Ohbuchi, K.Sato, H.Suzuki, Y.Okada, G.Dayanithi, D.Murphy, and Y.Ueta (2010).
Acid-sensing ion channels in rat hypothalamic vasopressin neurons of the supraoptic nucleus.
  J Physiol, 588, 2147-2162.  
19730675 J.L.Lahti, A.P.Silverman, and J.R.Cochran (2009).
Interrogating and predicting tolerated sequence diversity in protein folds: application to E. elaterium trypsin inhibitor-II cystine-knot miniprotein.
  PLoS Comput Biol, 5, e1000499.  
19489692 P.Escoubas, and G.F.King (2009).
Venomics as a drug discovery platform.
  Expert Rev Proteomics, 6, 221-224.  
19395383 Y.J.Qadri, B.K.Berdiev, Y.Song, H.L.Lippton, C.M.Fuller, and D.J.Benos (2009).
Psalmotoxin-1 docking to human acid-sensing ion channel-1.
  J Biol Chem, 284, 17625-17633.  
18340446 S.Becker, and H.Terlau (2008).
Toxins from cone snails: properties, applications and biotechnological production.
  Appl Microbiol Biotechnol, 79, 1-9.  
17096075 P.Escoubas (2006).
Molecular diversification in spider venoms: a web of combinatorial peptide libraries.
  Mol Divers, 10, 545-554.  
  16505147 X.Chen, H.Kalbacher, and S.Gründer (2006).
Interaction of acid-sensing ion channel (ASIC) 1 with the tarantula toxin psalmotoxin 1 is state dependent.
  J Gen Physiol, 127, 267-276.  
15987885 B.Chagot, P.Escoubas, S.Diochot, C.Bernard, M.Lazdunski, and H.Darbon (2005).
Solution structure of APETx2, a specific peptide inhibitor of ASIC3 proton-gated channels.
  Protein Sci, 14, 2003-2010.
PDB code: 1wxn
  15955877 X.Chen, H.Kalbacher, and S.Gründer (2005).
The tarantula toxin psalmotoxin 1 inhibits acid-sensing ion channel (ASIC) 1a by increasing its apparent H+ affinity.
  J Gen Physiol, 126, 71-79.  
16077905 X.Z.Zeng, Q.Zhu, and S.P.Liang (2005).
Sequence-specific assignment of 1H-NMR resonance and determination of the secondary structure of Jingzhaotoxin-I.
  Acta Biochim Biophys Sin (Shanghai), 37, 567-572.  
15096626 B.Chagot, P.Escoubas, E.Villegas, C.Bernard, G.Ferrat, G.Corzo, M.Lazdunski, and H.Darbon (2004).
Solution structure of Phrixotoxin 1, a specific peptide inhibitor of Kv4 potassium channels from the venom of the theraphosid spider Phrixotrichus auratus.
  Protein Sci, 13, 1197-1208.
PDB code: 1v7f
15044953 S.Diochot, A.Baron, L.D.Rash, E.Deval, P.Escoubas, S.Scarzello, M.Salinas, and M.Lazdunski (2004).
A new sea anemone peptide, APETx2, inhibits ASIC3, a major acid-sensitive channel in sensory neurons.
  EMBO J, 23, 1516-1525.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB codes are shown on the right.

 

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