› 7wuk

X-ray diffraction
1.63Å resolution

Crystal structure of UBR bof from PRT6

Released:
DOI: 10.2210/pdb7wuk/pdb
PDB entry 7wuk coloured by chain, front view.
PDB entry 7wuk coloured by chain, side view.
PDB entry 7wuk coloured by chain, top view.
Source organism: Oryza sativa Japonica Group
Entry authors: Ho MC, Lin TJ

Function and Biology Details

Reaction catalysed: 
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-102578 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase Chain: A
Molecule details ›
Chain: A
Length: 72 amino acids
Theoretical weight: 7.92 KDa
Source organism: Oryza sativa Japonica Group
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A0P0UY23 (Residues: 120-191; Coverage: 9%)
Gene names: OSNPB_010148000, Os01g0148000
Sequence domains: Putative zinc finger in N-recognin (UBR box)

Ligands and Environments

1 bound ligand:
Ligand ZN 3 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSRRC BEAMLINE BL13B1
Spacegroup: P3221
Unit cell:
a: 29.749Å b: 29.749Å c: 115.636Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.188 0.186 0.218
Expression system: Escherichia coli

Quick links