› 7kh1

Electron Microscopy
3.2Å resolution

Baseplate Complex for Myoviridae Phage XM1

Released:
DOI: 10.2210/pdb7kh1/pdb
PDB entry 7kh1 coloured by chain, front view.
PDB entry 7kh1 coloured by chain, side view.
PDB entry 7kh1 coloured by chain, top view.
Source organism: Vibrio phage XM1
Primary publication:
Structure of Vibrio phage XM1, a simple contractile DNA injection machine
Wang Z, Fokine A, Guo X, Jiang W, Rossmann MG, Kuhn RJ, Luo ZH, Klose T
Biorxiv (2021)
Related structures: EMD-22873

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 48-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-168361 (preferred)
Entry contents:
7 distinct polypeptide molecules
Macromolecules (7 distinct):
tail tube protein, gp7 Chains: A1, B1, C1, D1, E1, F1
Molecule details ›
Chains: A1, B1, C1, D1, E1, F1
Length: 143 amino acids
Theoretical weight: 15.67 KDa
Source organism: Vibrio phage XM1
baseplate wedge protein, gp17 Chains: A2, B2, C2, D2, E2, F2
Molecule details ›
Chains: A2, B2, C2, D2, E2, F2
Length: 242 amino acids
Theoretical weight: 27.42 KDa
Source organism: Vibrio phage XM1
baseplate organization protein, gp11 Chains: A3, B3, C3, D3, E3, F3
Molecule details ›
Chains: A3, B3, C3, D3, E3, F3
Length: 250 amino acids
Theoretical weight: 27.68 KDa
Source organism: Vibrio phage XM1
baseplate stabilizing protein, gp12 Chains: A4, B4, C4, D4, E4, F4
Molecule details ›
Chains: A4, B4, C4, D4, E4, F4
Length: 118 amino acids
Theoretical weight: 13.73 KDa
Source organism: Vibrio phage XM1
baseplate wedge protein, gp16 Chains: A5, B5, C5, D5, E5, F5, G5, H5, I5, J5, K5, L5
Molecule details ›
Chains: A5, B5, C5, D5, E5, F5, G5, H5, I5, J5, K5, L5
Length: 404 amino acids
Theoretical weight: 44.08 KDa
Source organism: Vibrio phage XM1
tail sheath protein, gp6 Chains: A6, B6, C6, D6, E6, F6
Molecule details ›
Chains: A6, B6, C6, D6, E6, F6
Length: 497 amino acids
Theoretical weight: 53.01 KDa
Source organism: Vibrio phage XM1
tail sheath initiator protein, gp15 Chains: A7, B7, C7, D7, E7, F7
Molecule details ›
Chains: A7, B7, C7, D7, E7, F7
Length: 117 amino acids
Theoretical weight: 13.39 KDa
Source organism: Vibrio phage XM1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.2Å
Relevant EMDB volumes: EMD-22873

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