› 7qgg

Electron Microscopy
2.86Å resolution

Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state

Released:
DOI: 10.2210/pdb7qgg/pdb
PDB entry 7qgg coloured by chain, front view.
PDB entry 7qgg coloured by chain, side view.
PDB entry 7qgg coloured by chain, top view.
Source organism: Rattus norvegicus
Primary publication:
Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state.
Kipper K, Mansour A, Pulk A
J Mol Biol 434 167801 (2022)
PMID: 36038000
Related structures: EMD-13954

Function and Biology Details

Reaction catalysed: 
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 84-mer (preferred)
PDBe Complex ID:
PDB-CPX-236666 (preferred)
Entry contents:
77 distinct polypeptide molecules
7 distinct RNA molecules
Macromolecules (84 distinct):
Small ribosomal subunit protein uS2 Chain: SA
Molecule details ›
Chain: SA
Length: 295 amino acids
Theoretical weight: 32.85 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P38983 (Residues: 1-295; Coverage: 100%)
Gene names: Lamr1, Rpsa
Sequence domains:
Small ribosomal subunit protein eS1 Chain: SB
Molecule details ›
Chain: SB
Length: 264 amino acids
Theoretical weight: 30 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P49242 (Residues: 1-264; Coverage: 100%)
Gene names: Fte-1, Fte1, Rps3a
Sequence domains: Ribosomal S3Ae family
Small ribosomal subunit protein uS3 Chain: SD
Molecule details ›
Chain: SD
Length: 243 amino acids
Theoretical weight: 26.72 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62909 (Residues: 1-243; Coverage: 100%)
Gene name: Rps3
Sequence domains:
Small ribosomal subunit protein eS4 Chain: SE
Molecule details ›
Chain: SE
Length: 263 amino acids
Theoretical weight: 29.65 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62703 (Residues: 1-263; Coverage: 100%)
Gene names: Rps4, Rps4x
Sequence domains:
Small ribosomal subunit protein uS7 Chain: SF
Molecule details ›
Chain: SF
Length: 204 amino acids
Theoretical weight: 22.94 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: B0BN81 (Residues: 1-204; Coverage: 100%)
Gene name: Rps5
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein eS7 Chain: SH
Molecule details ›
Chain: SH
Length: 194 amino acids
Theoretical weight: 22.17 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62083 (Residues: 1-194; Coverage: 100%)
Gene name: Rps7
Sequence domains: Ribosomal protein S7e
Small ribosomal subunit protein eS8 Chain: SI
Molecule details ›
Chain: SI
Length: 208 amino acids
Theoretical weight: 24.26 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62243 (Residues: 1-208; Coverage: 100%)
Gene name: Rps8
Sequence domains: Ribosomal protein S8e
Small ribosomal subunit protein eS10 Chain: SK
Molecule details ›
Chain: SK
Length: 165 amino acids
Theoretical weight: 18.95 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P63326 (Residues: 1-165; Coverage: 100%)
Gene name: Rps10
Sequence domains: Plectin/S10 domain
Small ribosomal subunit protein uS17 Chain: SL
Molecule details ›
Chain: SL
Length: 158 amino acids
Theoretical weight: 18.47 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A8B8VW69 (Residues: 1-158; Coverage: 100%)
Gene name: RPS11
Sequence domains:
Small ribosomal subunit protein uS19 Chain: SP
Molecule details ›
Chain: SP
Length: 145 amino acids
Theoretical weight: 17.08 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A2K6QL61 (Residues: 1-145; Coverage: 100%)
Sequence domains: Ribosomal protein S19
40S ribosomal protein S16 Chain: SQ
Molecule details ›
Chain: SQ
Length: 146 amino acids
Theoretical weight: 16.48 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q5XFV9 (Residues: 14-159; Coverage: 92%)
Gene names: LOC102548369, Rps16
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein eS17 Chain: SR
Molecule details ›
Chain: SR
Length: 135 amino acids
Theoretical weight: 15.54 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P04644 (Residues: 1-135; Coverage: 100%)
Gene name: Rps17
Sequence domains: Ribosomal S17
Small ribosomal subunit protein uS13 Chain: SS
Molecule details ›
Chain: SS
Length: 152 amino acids
Theoretical weight: 17.76 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: H0WTR0 (Residues: 1-152; Coverage: 100%)
Gene name: RPS18
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein eS19 Chain: ST
Molecule details ›
Chain: ST
Length: 145 amino acids
Theoretical weight: 16.12 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P17074 (Residues: 1-145; Coverage: 100%)
Gene name: Rps19
Sequence domains: Ribosomal protein S19e
Small ribosomal subunit protein uS10 Chain: SU
Molecule details ›
Chain: SU
Length: 119 amino acids
Theoretical weight: 13.4 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P60868 (Residues: 1-119; Coverage: 100%)
Gene name: Rps20
Sequence domains: Ribosomal protein S10p/S20e
Small ribosomal subunit protein eS21 Chain: SV
Molecule details ›
Chain: SV
Length: 83 amino acids
Theoretical weight: 9.14 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P05765 (Residues: 1-83; Coverage: 100%)
Gene name: Rps21
Sequence domains: Ribosomal protein S21e
Small ribosomal subunit protein uS12 Chain: SX
Molecule details ›
Chain: SX
Length: 143 amino acids
Theoretical weight: 15.84 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A340WVW7 (Residues: 1-143; Coverage: 100%)
Gene name: RPS23
Sequence domains: Ribosomal protein S12/S23
40S ribosomal protein S26 Chain: Sa
Molecule details ›
Chain: Sa
Length: 115 amino acids
Theoretical weight: 13.05 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A2K5LQY6 (Residues: 1-115; Coverage: 100%)
Sequence domains: Ribosomal protein S26e
Small ribosomal subunit protein eS28 Chain: Sc
Molecule details ›
Chain: Sc
Length: 69 amino acids
Theoretical weight: 7.86 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A3M0JHZ8 (Residues: 1-69; Coverage: 100%)
Gene name: DUI87_22462
Sequence domains: Ribosomal protein S28e
Small ribosomal subunit protein uS14 Chain: Sd
Molecule details ›
Chain: Sd
Length: 56 amino acids
Theoretical weight: 6.69 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A2J8WKD7 (Residues: 1-56; Coverage: 100%)
Gene name: CR201_G0009512
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein RACK1 Chain: Sg
Molecule details ›
Chain: Sg
Length: 317 amino acids
Theoretical weight: 35.12 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A2K6K8B0 (Residues: 1-317; Coverage: 100%)
Gene name: RACK1
Sequence domains: WD domain, G-beta repeat
Small ribosomal subunit protein uS5 Chain: SC
Molecule details ›
Chain: SC
Length: 293 amino acids
Theoretical weight: 31.28 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P27952 (Residues: 1-293; Coverage: 100%)
Gene name: Rps2
Sequence domains:
Small ribosomal subunit protein eS6 Chain: SG
Molecule details ›
Chain: SG
Length: 249 amino acids
Theoretical weight: 28.75 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62755 (Residues: 1-249; Coverage: 100%)
Gene name: Rps6
Sequence domains: Ribosomal protein S6e
Small ribosomal subunit protein uS4 Chain: SJ
Molecule details ›
Chain: SJ
Length: 194 amino acids
Theoretical weight: 22.64 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A6J0B498 (Residues: 1-194; Coverage: 100%)
Gene name: RPS9
Sequence domains:
Small ribosomal subunit protein eS12 Chain: SM
Molecule details ›
Chain: SM
Length: 132 amino acids
Theoretical weight: 14.55 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P63324 (Residues: 1-132; Coverage: 100%)
Gene name: Rps12
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Small ribosomal subunit protein uS15 Chain: SN
Molecule details ›
Chain: SN
Length: 151 amino acids
Theoretical weight: 17.26 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A663F1C0 (Residues: 1-151; Coverage: 100%)
Gene name: RPS13
Sequence domains:
Small ribosomal subunit protein uS11 Chain: SO
Molecule details ›
Chain: SO
Length: 151 amino acids
Theoretical weight: 16.29 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P13471 (Residues: 1-151; Coverage: 100%)
Gene name: Rps14
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein uS8 Chain: SW
Molecule details ›
Chain: SW
Length: 130 amino acids
Theoretical weight: 14.87 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A2K5QKS6 (Residues: 1-130; Coverage: 100%)
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein eS24 Chain: SY
Molecule details ›
Chain: SY
Length: 133 amino acids
Theoretical weight: 15.46 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62850 (Residues: 1-133; Coverage: 100%)
Gene name: Rps24
Sequence domains: Ribosomal protein S24e
40S ribosomal protein S25 Chain: SZ
Molecule details ›
Chain: SZ
Length: 125 amino acids
Theoretical weight: 13.78 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A6J3IG71 (Residues: 1-125; Coverage: 100%)
Gene names: LOC116557045, RPS25
Sequence domains: S25 ribosomal protein
40S ribosomal protein S27 Chain: Sb
Molecule details ›
Chain: Sb
Length: 84 amino acids
Theoretical weight: 9.48 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A7J8BG50 (Residues: 1-84; Coverage: 100%)
Gene name: HJG63_016964
Sequence domains: Ribosomal protein S27
Ubiquitin-like domain-containing protein Chain: Se
Molecule details ›
Chain: Se
Length: 59 amino acids
Theoretical weight: 6.67 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A2K6U587 (Residues: 75-133; Coverage: 44%)
Sequence domains: Ribosomal protein S30
Ubiquitin-ribosomal protein eS31 fusion protein Chain: Sf
Molecule details ›
Chain: Sf
Length: 156 amino acids
Theoretical weight: 17.99 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62982 (Residues: 1-156; Coverage: 100%)
Gene names: Rps27a, Uba80, Ubcep1
Sequence domains:
Large ribosomal subunit protein uL2 Chain: A
Molecule details ›
Chain: A
Length: 257 amino acids
Theoretical weight: 28.09 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A8B8VPA8 (Residues: 1-257; Coverage: 100%)
Gene name: RPL8
Sequence domains:
Large ribosomal subunit protein uL3 Chain: B
Molecule details ›
Chain: B
Length: 403 amino acids
Theoretical weight: 46.24 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P21531 (Residues: 1-403; Coverage: 100%)
Gene name: Rpl3
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4 Chain: C
Molecule details ›
Chain: C
Length: 421 amino acids
Theoretical weight: 47.36 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P50878 (Residues: 1-421; Coverage: 100%)
Gene names: Rpl1, Rpl4
Sequence domains:
Large ribosomal subunit protein uL18 Chain: F
Molecule details ›
Chain: F
Length: 297 amino acids
Theoretical weight: 34.52 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P09895 (Residues: 1-297; Coverage: 100%)
Gene name: Rpl5
Sequence domains:
Large ribosomal subunit protein eL6 Chain: G
Molecule details ›
Chain: G
Length: 298 amino acids
Theoretical weight: 33.64 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P21533 (Residues: 1-298; Coverage: 100%)
Gene name: Rpl6
Sequence domains:
Large ribosomal subunit protein uL30 Chain: H
Molecule details ›
Chain: H
Length: 260 amino acids
Theoretical weight: 30.4 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P05426 (Residues: 1-260; Coverage: 100%)
Gene name: Rpl7
Sequence domains:
Large ribosomal subunit protein eL8 Chain: I
Molecule details ›
Chain: I
Length: 266 amino acids
Theoretical weight: 30.06 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62425 (Residues: 1-266; Coverage: 100%)
Gene name: Rpl7a
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein uL6 Chain: J
Molecule details ›
Chain: J
Length: 192 amino acids
Theoretical weight: 21.93 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P17077 (Residues: 1-192; Coverage: 100%)
Gene name: Rpl9
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein uL16 Chain: K
Molecule details ›
Chain: K
Length: 214 amino acids
Theoretical weight: 24.66 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q6PDV7 (Residues: 1-214; Coverage: 100%)
Gene name: Rpl10
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein uL5 Chain: L
Molecule details ›
Chain: L
Length: 178 amino acids
Theoretical weight: 20.29 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62914 (Residues: 1-178; Coverage: 100%)
Gene name: Rpl11
Sequence domains:
Large ribosomal subunit protein eL13 Chain: M
Molecule details ›
Chain: M
Length: 211 amino acids
Theoretical weight: 24.37 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P41123 (Residues: 1-211; Coverage: 100%)
Gene name: Rpl13
Sequence domains: Ribosomal protein L13e
Large ribosomal subunit protein eL14 Chain: N
Molecule details ›
Chain: N
Length: 214 amino acids
Theoretical weight: 23.39 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q63507 (Residues: 1-214; Coverage: 100%)
Gene name: Rpl14
Sequence domains: Ribosomal protein L14
Ribosomal protein L15 Chain: O
Molecule details ›
Chain: O
Length: 204 amino acids
Theoretical weight: 24.21 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: L8Y0W1 (Residues: 1-204; Coverage: 100%)
Gene names: TREES_T100017479, TREES_T100017480
Sequence domains: Ribosomal L15
Large ribosomal subunit protein uL13 Chain: P
Molecule details ›
Chain: P
Length: 203 amino acids
Theoretical weight: 23.5 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q5RK10 (Residues: 1-203; Coverage: 100%)
Gene names: Flt3lg, Rpl13a
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein uL22 Chain: Q
Molecule details ›
Chain: Q
Length: 184 amino acids
Theoretical weight: 21.44 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A8J4KQ25 (Residues: 1-184; Coverage: 100%)
Gene names: FQV12_0008225, Rpl17
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein eL18 Chain: R
Molecule details ›
Chain: R
Length: 188 amino acids
Theoretical weight: 21.71 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P12001 (Residues: 1-188; Coverage: 100%)
Gene name: Rpl18
Sequence domains: Ribosomal protein 60S L18 and 50S L18e
Ribosomal protein L19 Chain: S
Molecule details ›
Chain: S
Length: 196 amino acids
Theoretical weight: 23.54 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A2J8KH59 (Residues: 1-196; Coverage: 100%)
Gene name: CK820_G0039174
Sequence domains: Ribosomal protein L19e
Large ribosomal subunit protein eL20 Chain: T
Molecule details ›
Chain: T
Length: 176 amino acids
Theoretical weight: 20.78 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62718 (Residues: 1-176; Coverage: 100%)
Gene name: Rpl18a
Sequence domains: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Large ribosomal subunit protein eL21 Chain: U
Molecule details ›
Chain: U
Length: 160 amino acids
Theoretical weight: 18.62 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q6PDW2 (Residues: 1-160; Coverage: 100%)
Gene names: LOC100360604, LOC100361103, LOC100361811, LOC108348870, LOC691195, RGD1562469, Rpl21
Sequence domains: Ribosomal protein L21e
Large ribosomal subunit protein eL22 Chain: V
Molecule details ›
Chain: V
Length: 128 amino acids
Theoretical weight: 14.78 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q6PDV8 (Residues: 1-128; Coverage: 100%)
Gene names: LOC100360057, LOC100363800, Rpl22, Rpl22-ps2
Sequence domains: Ribosomal L22e protein family
Large ribosomal subunit protein uL14 Chain: W
Molecule details ›
Chain: W
Length: 140 amino acids
Theoretical weight: 14.89 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A3P9HH38 (Residues: 1-140; Coverage: 100%)
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein eL24 Chain: X
Molecule details ›
Chain: X
Length: 157 amino acids
Theoretical weight: 17.83 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: F2X267 (Residues: 1-157; Coverage: 100%)
Gene names: LOC117798870, RPL24, Rpl24
Sequence domains: Ribosomal protein L24e
Large ribosomal subunit protein uL23 Chain: Y
Molecule details ›
Chain: Y
Length: 156 amino acids
Theoretical weight: 17.74 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62752 (Residues: 1-156; Coverage: 100%)
Gene name: Rpl23a
Sequence domains:
Large ribosomal subunit protein uL24 Chain: Z
Molecule details ›
Chain: Z
Length: 145 amino acids
Theoretical weight: 17.32 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P12749 (Residues: 1-145; Coverage: 100%)
Gene name: Rpl26
Sequence domains:
60S ribosomal protein L27 Chain: a
Molecule details ›
Chain: a
Length: 136 amino acids
Theoretical weight: 15.84 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A851LWS6 (Residues: 1-136; Coverage: 100%)
Gene names: CORCRI_R11721, Rpl27
Sequence domains:
Large ribosomal subunit protein uL15 Chain: b
Molecule details ›
Chain: b
Length: 148 amino acids
Theoretical weight: 16.66 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P18445 (Residues: 1-148; Coverage: 100%)
Gene name: Rpl27a
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein eL29 Chain: c
Molecule details ›
Chain: c
Length: 156 amino acids
Theoretical weight: 17.37 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P25886 (Residues: 1-156; Coverage: 100%)
Gene name: Rpl29
Sequence domains: Ribosomal L29e protein family
Large ribosomal subunit protein eL30 Chain: d
Molecule details ›
Chain: d
Length: 115 amino acids
Theoretical weight: 12.81 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62890 (Residues: 1-115; Coverage: 100%)
Gene name: Rpl30
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein eL31 Chain: e
Molecule details ›
Chain: e
Length: 125 amino acids
Theoretical weight: 14.49 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: G7NZE1 (Residues: 1-125; Coverage: 100%)
Sequence domains: Ribosomal protein L31e
Large ribosomal subunit protein eL32 Chain: f
Molecule details ›
Chain: f
Length: 135 amino acids
Theoretical weight: 15.9 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62912 (Residues: 1-135; Coverage: 100%)
Gene name: Rpl32
Sequence domains: Ribosomal protein L32
Large ribosomal subunit protein eL33 Chain: g
Molecule details ›
Chain: g
Length: 110 amino acids
Theoretical weight: 12.58 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P04646 (Residues: 1-110; Coverage: 100%)
Gene name: Rpl35a
Sequence domains: Ribosomal protein L35Ae
Large ribosomal subunit protein eL34 Chain: h
Molecule details ›
Chain: h
Length: 117 amino acids
Theoretical weight: 13.33 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A6HVR9 (Residues: 1-117; Coverage: 100%)
Gene name: Rpl34
Large ribosomal subunit protein uL29 Chain: i
Molecule details ›
Chain: i
Length: 123 amino acids
Theoretical weight: 14.6 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P17078 (Residues: 1-123; Coverage: 100%)
Gene name: Rpl35
Sequence domains: Ribosomal L29 protein
Large ribosomal subunit protein eL36 Chain: j
Molecule details ›
Chain: j
Length: 105 amino acids
Theoretical weight: 12.29 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q9Y3U8 (Residues: 1-105; Coverage: 100%)
Gene name: RPL36
Sequence domains: Ribosomal protein L36e
Ribosomal protein L37 Chain: k
Molecule details ›
Chain: k
Length: 97 amino acids
Theoretical weight: 11.11 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A2Y9RW09 (Residues: 1-97; Coverage: 100%)
Gene names: LOC101347038, RPL37
Sequence domains: Ribosomal protein L37e
Large ribosomal subunit protein eL38 Chain: l
Molecule details ›
Chain: l
Length: 70 amino acids
Theoretical weight: 8.24 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A1A7W9T9 (Residues: 1-70; Coverage: 100%)
Gene name: RPL38
Sequence domains: Ribosomal L38e protein family
Large ribosomal subunit protein eL39 Chain: m
Molecule details ›
Chain: m
Length: 51 amino acids
Theoretical weight: 6.43 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A7N4PFJ2 (Residues: 1-51; Coverage: 100%)
Gene name: LOC100920732
Sequence domains: Ribosomal L39 protein
Ubiquitin-ribosomal protein eL40 fusion protein Chain: n
Molecule details ›
Chain: n
Length: 128 amino acids
Theoretical weight: 14.76 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: Q6P7R7 (Residues: 1-128; Coverage: 100%)
Gene names: Uba52, rCG_38638
Sequence domains:
Small ribosomal subunit protein eS32 Chain: o
Molecule details ›
Chain: o
Length: 25 amino acids
Theoretical weight: 3.47 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62948 (Residues: 1-25; Coverage: 100%)
Gene name: Rpl41
Sequence domains: Ribosomal protein L41
Large ribosomal subunit protein eL42 Chain: p
Molecule details ›
Chain: p
Length: 106 amino acids
Theoretical weight: 12.48 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A7J7V6K8 (Residues: 33-138; Coverage: 77%)
Gene name: mPipKuh1_015125
Sequence domains: Ribosomal protein L44
Ribosomal protein L37a Chain: q
Molecule details ›
Chain: q
Length: 92 amino acids
Theoretical weight: 10.3 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: A0A6J2LF66 (Residues: 1-92; Coverage: 100%)
Gene names: HJG60_016583, RPL37A
Sequence domains: Ribosomal L37ae protein family
Large ribosomal subunit protein eL28 Chain: r
Molecule details ›
Chain: r
Length: 137 amino acids
Theoretical weight: 15.77 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: F7EPV5 (Residues: 29-165; Coverage: 83%)
Gene name: Rpl28
Sequence domains: Ribosomal L28e protein family
Large ribosomal subunit protein uL1 Chain: Cz
Molecule details ›
Chain: Cz
Length: 217 amino acids
Theoretical weight: 24.88 KDa
Source organism: Rattus norvegicus
UniProt:
  • Canonical: P62907 (Residues: 1-217; Coverage: 100%)
Gene name: Rpl10a
Sequence domains: Ribosomal protein L1p/L10e family
ALA-ALA-LYS-ALA Chain: y
Molecule details ›
Chain: y
Length: 4 amino acids
Theoretical weight: 360 Da
Source organism: Rattus norvegicus
RNA (1872-MER) Chain: S2
Molecule details ›
Chain: S2
Length: 1872 nucleotides
Theoretical weight: 604.24 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA
RNA (157-MER) Chain: D
Molecule details ›
Chain: D
Length: 157 nucleotides
Theoretical weight: 50.45 KDa
Sequence domains: 5.8S ribosomal RNA
RNA (121-MER) Chain: E
Molecule details ›
Chain: E
Length: 121 nucleotides
Theoretical weight: 39 KDa
Sequence domains: 5S ribosomal RNA
RNA (4803-MER) Chain: t
Molecule details ›
Chain: t
Length: 4803 nucleotides
Theoretical weight: 1553.95 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
RNA (76-MER) Chain: u
Molecule details ›
Chain: u
Length: 76 nucleotides
Theoretical weight: 24.41 KDa
Sequence domains: tRNA
RNA (76-MER) Chain: v
Molecule details ›
Chain: v
Length: 76 nucleotides
Theoretical weight: 24.44 KDa
Sequence domains: tRNA
RNA (5'-D(P*()P*()P*()P*())-R(P*UP*UP*AP*CP*GP*GP*CP*GP*GP*UP*()P*()P*()P*()P*()P*())-3') Chain: w
Molecule details ›
Chain: w
Length: 20 nucleotides
Theoretical weight: 6.36 KDa

Ligands and Environments

2 bound ligands:
Ligand MG 33 x MG
Ligand ZN 6 x ZN
12 modified residues:
Ligand A2M 7 x A2M
Ligand OMU 2 x OMU
Ligand PSU 6 x PSU
Ligand OMC 4 x OMC
Ligand OMG 3 x OMG
Ligand MMX 1 x MMX
Ligand 5MU 1 x 5MU
Ligand 5MC 1 x 5MC
Ligand M7A 1 x M7A
Ligand UR3 1 x UR3
Ligand 6MZ 1 x 6MZ
Ligand MA6 2 x MA6

Experiments and Validation Details

Entry percentile scores
Resolution: 2.86Å
Relevant EMDB volumes: EMD-13954

Quick links

Citations

4 citation in other articles

Ribosomes in RNA Granules Are Stalled on mRNA Sequences That Are Consensus Sites for FMRP Association.
Anadolu et al. (2023)
3 more