6dmu Citations

Structural insights on TRPV5 gating by endogenous modulators.

Abstract

TRPV5 is a transient receptor potential channel involved in calcium reabsorption. Here we investigate the interaction of two endogenous modulators with TRPV5. Both phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2) and calmodulin (CaM) have been shown to directly bind to TRPV5 and activate or inactivate the channel, respectively. Using cryo-electron microscopy (cryo-EM), we determined TRPV5 structures in the presence of dioctanoyl PI(4,5)P2 and CaM. The PI(4,5)P2 structure reveals a binding site between the N-linker, S4-S5 linker and S6 helix of TRPV5. These interactions with PI(4,5)P2 induce conformational rearrangements in the lower gate, opening the channel. The CaM structure reveals two TRPV5 C-terminal peptides anchoring a single CaM molecule and that calcium inhibition is mediated through a cation-π interaction between Lys116 on the C-lobe of calcium-activated CaM and Trp583 at the intracellular gate of TRPV5. Overall, this investigation provides insight into the endogenous modulation of TRPV5, which has the potential to guide drug discovery.

Reviews - 6dmu mentioned but not cited (7)

  1. Tools for Understanding Nanoscale Lipid Regulation of Ion Channels. Robinson CV, Rohacs T, Hansen SB. Trends Biochem Sci 44 795-806 (2019)
  2. Structural insights into the gating mechanisms of TRPV channels. Pumroy RA, Fluck EC, Ahmed T, Moiseenkova-Bell VY. Cell Calcium 87 102168 (2020)
  3. Ligand-Binding Sites in Vanilloid-Subtype TRP Channels. Yelshanskaya MV, Sobolevsky AI. Front Pharmacol 13 900623 (2022)
  4. High-resolution structures of transient receptor potential vanilloid channels: Unveiling a functionally diverse group of ion channels. van Goor MK, de Jager L, Cheng Y, van der Wijst J. Protein Sci 29 1569-1580 (2020)
  5. Druggable Lipid Binding Sites in Pentameric Ligand-Gated Ion Channels and Transient Receptor Potential Channels. Cheng WWL, Arcario MJ, Petroff JT. Front Physiol 12 798102 (2021)
  6. Regulation of the cold-sensing TRPM8 channels by phosphoinositides and Gq-coupled receptors. Liu L, Rohacs T. Channels (Austin) 14 79-86 (2020)
  7. Molecular pharmacology of the onco-TRP channel TRPV6. Neuberger A, Sobolevsky AI. Channels (Austin) 17 2266669 (2023)

Articles - 6dmu mentioned but not cited (9)

  1. Structural basis for PtdInsP2-mediated human TRPML1 regulation. Fine M, Schmiege P, Li X. Nat Commun 9 4192 (2018)
  2. Structure-based characterization of novel TRPV5 inhibitors. Hughes TE, Del Rosario JS, Kapoor A, Yazici AT, Yudin Y, Fluck EC, Filizola M, Rohacs T, Moiseenkova-Bell VY. Elife 8 e49572 (2019)
  3. Global alignment and assessment of TRP channel transmembrane domain structures to explore functional mechanisms. Huffer KE, Aleksandrova AA, Jara-Oseguera A, Forrest LR, Swartz KJ. Elife 9 e58660 (2020)
  4. Lipid Interactions of a Ciliary Membrane TRP Channel: Simulation and Structural Studies of Polycystin-2. Wang Q, Corey RA, Hedger G, Aryal P, Grieben M, Nasrallah C, Baronina A, Pike ACW, Shi J, Carpenter EP, Sansom MSP. Structure 28 169-184.e5 (2020)
  5. A hypothetical molecular mechanism for TRPV1 activation that invokes rotation of an S6 asparagine. Kasimova MA, Yazici AT, Yudin Y, Granata D, Klein ML, Rohacs T, Carnevale V. J Gen Physiol 150 1554-1566 (2018)
  6. Structural basis of TRPV5 regulation by physiological and pathophysiological modulators. Fluck EC, Yazici AT, Rohacs T, Moiseenkova-Bell VY. Cell Rep 39 110737 (2022)
  7. Impact of the Protonation State of Phosphatidylinositol 4,5-Bisphosphate (PIP2) on the Binding Kinetics and Thermodynamics to Transient Receptor Potential Vanilloid (TRPV5): A Milestoning Study. Fathizadeh A, Senning E, Elber R. J Phys Chem B 125 9547-9556 (2021)
  8. A cooperative knock-on mechanism underpins Ca2+-selective cation permeation in TRPV channels. Ives CM, Thomson NJ, Zachariae U. J Gen Physiol 155 e202213226 (2023)
  9. Mapping of CaM, S100A1 and PIP2-Binding Epitopes in the Intracellular N- and C-Termini of TRPM4. Bousova K, Barvik I, Herman P, Hofbauerová K, Monincova L, Majer P, Zouharova M, Vetyskova V, Postulkova K, Vondrasek J. Int J Mol Sci 21 E4323 (2020)


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  1. Novel roles of phosphoinositides in signaling, lipid transport, and disease. Hammond GRV, Burke JE. Curr Opin Cell Biol 63 57-67 (2020)
  2. Transient Receptor Potential Channels and Calcium Signaling. Vangeel L, Voets T. Cold Spring Harb Perspect Biol 11 a035048 (2019)
  3. Structural mechanisms of transient receptor potential ion channels. Cao E. J Gen Physiol 152 e201811998 (2020)
  4. The role of π-helices in TRP channel gating. Zubcevic L, Lee SY. Curr Opin Struct Biol 58 314-323 (2019)
  5. Direct Structural Insights into GABAA Receptor Pharmacology. Kim JJ, Hibbs RE. Trends Biochem Sci 46 502-517 (2021)
  6. Calcium selective channel TRPV6: Structure, function, and implications in health and disease. Khattar V, Wang L, Peng JB. Gene 817 146192 (2022)
  7. Sensory TRP Channels in Three Dimensions. Diver MM, Lin King JV, Julius D, Cheng Y. Annu Rev Biochem 91 629-649 (2022)
  8. Structure and function of the calcium-selective TRP channel TRPV6. Yelshanskaya MV, Nadezhdin KD, Kurnikova MG, Sobolevsky AI. J Physiol 599 2673-2697 (2021)
  9. Current View of Ligand and Lipid Recognition by the Menthol Receptor TRPM8. Yin Y, Lee SY. Trends Biochem Sci 45 806-819 (2020)
  10. TRP ion channels: Proteins with conformational flexibility. López-Romero AE, Hernández-Araiza I, Torres-Quiroz F, Tovar-Y-Romo LB, Islas LD, Rosenbaum T. Channels (Austin) 13 207-226 (2019)
  11. Structures and Dynamics of Native-State Transmembrane Protein Targets and Bound Lipids. Overduin M, Trieber C, Prosser RS, Picard LP, Sheff JG. Membranes (Basel) 11 451 (2021)
  12. Atomistic Insights of Calmodulin Gating of Complete Ion Channels. Núñez E, Muguruza-Montero A, Villarroel A. Int J Mol Sci 21 E1285 (2020)
  13. Two Decades of Evolution of Our Understanding of the Transient Receptor Potential Melastatin 2 (TRPM2) Cation Channel. Szollosi A. Life (Basel) 11 397 (2021)
  14. The Role of Lipids in CRAC Channel Function. Maltan L, Andova AM, Derler I. Biomolecules 12 352 (2022)
  15. Alterations in the microenvironment and the effects produced of TRPV5 in osteoporosis. Luo ZH, Ma JX, Zhang W, Tian AX, Gong SW, Li Y, Lai YX, Ma XL. J Transl Med 21 327 (2023)
  16. Interaction of Calmodulin with TRPM: An Initiator of Channel Modulation. Vydra Bousova K, Zouharova M, Jiraskova K, Vetyskova V. Int J Mol Sci 24 15162 (2023)
  17. Targeting ion channels with ultra-large library screening for hit discovery. Melancon K, Pliushcheuskaya P, Meiler J, Künze G. Front Mol Neurosci 16 1336004 (2023)

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  1. Structural basis of cooling agent and lipid sensing by the cold-activated TRPM8 channel. Yin Y, Le SC, Hsu AL, Borgnia MJ, Yang H, Lee SY. Science 363 eaav9334 (2019)
  2. Structural insights into TRPM8 inhibition and desensitization. Diver MM, Cheng Y, Julius D. Science 365 1434-1440 (2019)
  3. Molecular mechanism of TRPV2 channel modulation by cannabidiol. Pumroy RA, Samanta A, Liu Y, Hughes TE, Zhao S, Yudin Y, Rohacs T, Han S, Moiseenkova-Bell VY. Elife 8 e48792 (2019)
  4. Structural mechanisms of phospholipid activation of the human TPC2 channel. She J, Zeng W, Guo J, Chen Q, Bai XC, Jiang Y. Elife 8 e45222 (2019)
  5. Structural insight into TRPV5 channel function and modulation. Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J. Proc Natl Acad Sci U S A 116 8869-8878 (2019)
  6. Gating of human TRPV3 in a lipid bilayer. Deng Z, Maksaev G, Rau M, Xie Z, Hu H, Fitzpatrick JAJ, Yuan P. Nat Struct Mol Biol 27 635-644 (2020)
  7. Phosphatidylinositol 4,5-bisphosphate (PIP2) and Ca2+ are both required to open the Cl- channel TMEM16A. Tembo M, Wozniak KL, Bainbridge RE, Carlson AE. J Biol Chem 294 12556-12564 (2019)
  8. The ion selectivity filter is not an activation gate in TRPV1-3 channels. Jara-Oseguera A, Huffer KE, Swartz KJ. Elife 8 e51212 (2019)
  9. Symmetry transitions during gating of the TRPV2 ion channel in lipid membranes. Zubcevic L, Hsu AL, Borgnia MJ, Lee SY. Elife 8 e45779 (2019)
  10. Structure of the human sodium leak channel NALCN. Kschonsak M, Chua HC, Noland CL, Weidling C, Clairfeuille T, Bahlke OØ, Ameen AO, Li ZR, Arthur CP, Ciferri C, Pless SA, Payandeh J. Nature 587 313-318 (2020)
  11. Conserved allosteric pathways for activation of TRPV3 revealed through engineering vanilloid-sensitivity. Zhang F, Swartz KJ, Jara-Oseguera A. Elife 8 e42756 (2019)
  12. Crowding-induced opening of the mechanosensitive Piezo1 channel in silico. Jiang W, Del Rosario JS, Botello-Smith W, Zhao S, Lin YC, Zhang H, Lacroix J, Rohacs T, Luo YL. Commun Biol 4 84 (2021)
  13. Structural basis of TRPC4 regulation by calmodulin and pharmacological agents. Vinayagam D, Quentin D, Yu-Strzelczyk J, Sitsel O, Merino F, Stabrin M, Hofnagel O, Yu M, Ledeboer MW, Nagel G, Malojcic G, Raunser S. Elife 9 e60603 (2020)
  14. Structural insights into TRPV2 activation by small molecules. Pumroy RA, Protopopova AD, Fricke TC, Lange IU, Haug FM, Nguyen PT, Gallo PN, Sousa BB, Bernardes GJL, Yarov-Yarovoy V, Leffler A, Moiseenkova-Bell VY. Nat Commun 13 2334 (2022)
  15. Contribution of Coiled-Coil Assembly to Ca2+/Calmodulin-Dependent Inactivation of TRPC6 Channel and its Impacts on FSGS-Associated Phenotypes. Polat OK, Uno M, Maruyama T, Tran HN, Imamura K, Wong CF, Sakaguchi R, Ariyoshi M, Itsuki K, Ichikawa J, Morii T, Shirakawa M, Inoue R, Asanuma K, Reiser J, Tochio H, Mori Y, Mori MX. J Am Soc Nephrol 30 1587-1603 (2019)
  16. TRP channels in health and disease at a glance. Yue L, Xu H. J Cell Sci 134 jcs258372 (2021)
  17. The Contribution of the Ankyrin Repeat Domain of TRPV1 as a Thermal Module. Ladrón-de-Guevara E, Dominguez L, Rangel-Yescas GE, Fernández-Velasco DA, Torres-Larios A, Rosenbaum T, Islas LD. Biophys J 118 836-845 (2020)
  18. Autoinhibition of TRPV6 Channel and Regulation by PIP2. Cai R, Liu X, Zhang R, Hofmann L, Zheng W, Amin MR, Wang L, Hu Q, Peng JB, Michalak M, Flockerzi V, Ali DW, Chen XZ, Tang J. iScience 23 101444 (2020)
  19. Inactivation-mimicking block of the epithelial calcium channel TRPV6. Bhardwaj R, Lindinger S, Neuberger A, Nadezhdin KD, Singh AK, Cunha MR, Derler I, Gyimesi G, Reymond JL, Hediger MA, Romanin C, Sobolevsky AI. Sci Adv 6 eabe1508 (2020)
  20. Dual regulation of TRPV1 channels by phosphatidylinositol via functionally distinct binding sites. Yazici AT, Gianti E, Kasimova MA, Lee BH, Carnevale V, Rohacs T. J Biol Chem 296 100573 (2021)
  21. Anionic lipids unlock the gates of select ion channels in the pacemaker family. Schmidpeter PAM, Wu D, Rheinberger J, Riegelhaupt PM, Tang H, Robinson CV, Nimigean CM. Nat Struct Mol Biol 29 1092-1100 (2022)
  22. Structure of Heteropentameric GABAA Receptors and Receptor-Anchoring Properties of Gephyrin. Kasaragod VB, Schindelin H. Front Mol Neurosci 12 191 (2019)
  23. Structural basis of TRPV3 inhibition by an antagonist. Fan J, Hu L, Yue Z, Liao D, Guo F, Ke H, Jiang D, Yang Y, Lei X. Nat Chem Biol 19 81-90 (2023)
  24. Deficiency of Inositol Monophosphatase Activity Decreases Phosphoinositide Lipids and Enhances TRPV1 Function In Vivo. Caires R, Bell B, Lee J, Romero LO, Vásquez V, Cordero-Morales JF. J Neurosci 41 408-423 (2021)
  25. Theoretical Study of the Structural Stability, Chemical Reactivity, and Protein Interaction for NMP Compounds as Modulators of the Endocannabinoid System. Rangel-Galván M, Castro ME, Perez-Aguilar JM, Caballero NA, Rangel-Huerta A, Melendez FJ. Molecules 27 414 (2022)
  26. Activity of the yeast vacuolar TRP channel TRPY1 is inhibited by Ca2+-calmodulin binding. Amini M, Chang Y, Wissenbach U, Flockerzi V, Schlenstedt G, Beck A. J Biol Chem 297 101126 (2021)
  27. Auto-inhibitory intramolecular S5/S6 interaction in the TRPV6 channel regulates breast cancer cell migration and invasion. Cai R, Wang L, Liu X, Michalak M, Tang J, Peng JB, Chen XZ. Commun Biol 4 990 (2021)
  28. Mechanical properties of anionic asymmetric bilayers from atomistic simulations. Jiang W, Lin YC, Luo YL. J Chem Phys 154 224701 (2021)
  29. Modulation of TRPV2 by endogenous and exogenous ligands: A computational study. Feng S, Pumroy RA, Protopopova AD, Moiseenkova-Bell VY, Im W. Protein Sci 32 e4490 (2023)
  30. Sequence and structural conservation reveal fingerprint residues in TRP channels. Cabezas-Bratesco D, Mcgee FA, Colenso CK, Zavala K, Granata D, Carnevale V, Opazo JC, Brauchi SE. Elife 11 e73645 (2022)
  31. Structural basis of the activation of TRPV5 channels by long-chain acyl-Coenzyme-A. Lee BH, De Jesús Pérez JJ, Moiseenkova-Bell V, Rohacs T. Nat Commun 14 5883 (2023)
  32. The role of calmodulin in regulating calcium-permeable PKD2L1 channel activity. Park EYJ, Baik JY, Kwak M, So I. Korean J Physiol Pharmacol 23 219-227 (2019)
  33. PIRT the TRP Channel Regulating Protein Binds Calmodulin and Cholesterol-Like Ligands. Sisco NJ, Luu DD, Kim M, Van Horn WD. Biomolecules 10 E478 (2020)
  34. Production and purification of TRPV2 and TRPV5 for structural and functional studies. Fluck EC, Pumroy RA, Moiseenkova-Bell VY. Methods Enzymol 653 49-74 (2021)
  35. Purification of Functional Human TRP Channels Recombinantly Produced in Yeast. Zhang L, Wang K, Klaerke DA, Calloe K, Lowrey L, Pedersen PA, Gourdon P, Gotfryd K. Cells 8 E148 (2019)
  36. Computational and functional studies of the PI(4,5)P2 binding site of the TRPM3 ion channel reveal interactions with other regulators. Zhao S, Carnevale V, Gabrielle M, Gianti E, Rohacs T. J Biol Chem 298 102547 (2022)
  37. Conceptual DFT, QTAIM, and Molecular Docking Approaches to Characterize the T-Type Calcium Channel Blocker Anandamide. Rangel-Galván M, Castro ME, Perez-Aguilar JM, Caballero NA, Melendez FJ. Front Chem 10 920661 (2022)
  38. Methods to study phosphoinositide regulation of ion channels. Yudin Y, Liu L, Nagwekar J, Rohacs T. Methods Enzymol 652 49-79 (2021)
  39. Regulation of ThermoTRP Channels by PIP2 and Cholesterol. Rosenbaum T, Morales-Lázaro SL. Adv Exp Med Biol 1422 245-277 (2023)
  40. Hydrophobic gating in bundle-crossing ion channels: a case study of TRPV4. Huang J, Chen J. Commun Biol 6 1094 (2023)
  41. Modulation of Calcium Homeostasis May Be Associated with Susceptibility to Renal Cell Carcinoma in Diabetic Nephropathy Rats. Luo Y, Lu Z, Waaga-Gasser AM, Yang H, Liu J, Wu J, Lu J, Liu X, Zhang L. Cancer Manag Res 12 9679-9689 (2020)
  42. Molecular architecture of the Gαi-bound TRPC5 ion channel. Won J, Kim J, Jeong H, Kim J, Feng S, Jeong B, Kwak M, Ko J, Im W, So I, Lee HH. Nat Commun 14 2550 (2023)
  43. Molecular details of ruthenium red pore block in TRPV channels. Pumroy RA, De Jesús-Pérez JJ, Protopopova AD, Rocereta JA, Fluck EC, Fricke T, Lee BH, Rohacs T, Leffler A, Moiseenkova-Bell V. EMBO Rep 25 506-523 (2024)
  44. Molecular insights into the structural and dynamical changes of calcium channel TRPV6 induced by its interaction with phosphatidylinositol 4,5-bisphosphate. Wang L, Cai R, Chen XZ, Peng JB. J Biomol Struct Dyn 41 6559-6568 (2023)
  45. TRPV6 Regulation by Cis-22a and Cholesterol. Humer C, Lindinger S, Carrel AL, Romanin C, Höglinger C. Biomolecules 12 804 (2022)
  46. Bidirectional Allosteric Coupling between PIP2 Binding and the Pore of the Oncochannel TRPV6. Humer C, Radiskovic T, Horváti K, Lindinger S, Groschner K, Romanin C, Höglinger C. Int J Mol Sci 25 618 (2024)
  47. Functional characterization of the transient receptor potential melastatin 2 (TRPM2) cation channel from Nematostella vectensis reconstituted into lipid bilayer. Szollosi A, Almássy J. Sci Rep 13 11471 (2023)
  48. Inhibition of TRPP3 by calmodulin through Ca2+/calmodulin-dependent protein kinase II. Liu X, Wang Y, Weng Z, Xu Q, Zhou C, Tang J, Chen XZ. Cell Insight 2 100088 (2023)
  49. Intracellular Helix-Loop-Helix Domain Modulates Inactivation Kinetics of Mammalian TRPV5 and TRPV6 Channels. Flores-Aldama L, Bustos D, Cabezas-Bratesco D, Gonzalez W, Brauchi SE. Int J Mol Sci 24 4470 (2023)
  50. Structural mechanism of TRPV5 inhibition by econazole. De Jesús-Pérez JJ, Gabrielle M, Raheem S, Fluck EC, Rohacs T, Moiseenkova-Bell VY. Structure 32 148-156.e5 (2024)