› 1wyb

X-ray diffraction
1.8Å resolution

Structure of 6-aminohexanoate-dimer hydrolase

Released:
DOI: 10.2210/pdb1wyb/pdb
PDB entry 1wyb coloured by chain, front view.
PDB entry 1wyb coloured by chain, side view.
PDB entry 1wyb coloured by chain, top view.
Source organism: Flavobacterium sp.
Entry authors: Negoro S, Ohki T, Shibata N, Mizuno N, Wakitani Y, Tsurukame J, Matsumoto K, Kawamoto I, Takeo M, Higuchi Y

Function and Biology Details

Reaction catalysed: 
(N-(6-aminohexanoyl))(n) + H(2)O = (N-(6-aminohexanoyl))(n-1) + 6-aminohexanoate
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-139361 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
6-aminohexanoate-dimer hydrolase Chain: A
Molecule details ›
Chain: A
Length: 392 amino acids
Theoretical weight: 42.84 KDa
Source organism: Flavobacterium sp.
Expression system: Escherichia coli
UniProt:
  • Canonical: P07062 (Residues: 1-392; Coverage: 100%)
Gene name: nylB'
Sequence domains: Beta-lactamase
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44B2
Spacegroup: P3221
Unit cell:
a: 96.37Å b: 96.37Å c: 113.09Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.185 0.185 0.203
Expression system: Escherichia coli

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