6n5m

X-ray diffraction
3.01Å resolution

Crystal structure of ABIN-1 UBAN in complex with one M1-linked di-ubiquitin

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-143458 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Ubiquitin Chain: A
Molecule details ›
Chain: A
Length: 157 amino acids
Theoretical weight: 17.48 KDa
Source organism: Mus musculus
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: P0CG50 (Residues: 532-684; Coverage: 21%)
Gene name: Ubc
Sequence domains: Ubiquitin family
TNFAIP3-interacting protein 1 Chains: B, D
Molecule details ›
Chains: B, D
Length: 72 amino acids
Theoretical weight: 8.69 KDa
Source organism: Mus musculus
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: Q9WUU8 (Residues: 463-532; Coverage: 11%)
Gene names: Abin, Naf1, Tnip1
Sequence domains: Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: P212121
Unit cell:
a: 42.008Å b: 62.109Å c: 123.791Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.241 0.239 0.278
Expression system: Escherichia coli K-12