› 3tlq

X-ray diffraction
1.91Å resolution

Crystal structure of EAL-like domain protein YdiV

Released:
DOI: 10.2210/pdb3tlq/pdb
PDB entry 3tlq coloured by chain, front view.
PDB entry 3tlq coloured by chain, side view.
PDB entry 3tlq coloured by chain, top view.
Source organism: Escherichia coli K-12
Primary publication:
Structural insight of a concentration-dependent mechanism by which YdiV inhibits Escherichia coli flagellum biogenesis and motility.
Li B, Li N, Wang F, Guo L, Huang Y, Liu X, Wei T, Zhu D, Liu C, Pan H, Xu S, Wang HW, Gu L
OpenAccess logo Nucleic Acids Res 40 11073-85 (2012)
PMID: 23002140

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-160064 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative anti-FlhC(2)FlhD(4) factor YdiV Chains: A, B
Molecule details ›
Chains: A, B
Length: 242 amino acids
Theoretical weight: 27.48 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P76204 (Residues: 1-237; Coverage: 100%)
Gene names: JW1697, b1707, cdgR, ydiV
Sequence domains: EAL domain
Structure domains: EAL domain

Ligands and Environments

2 bound ligands:
Ligand PO4 6 x PO4
Ligand GOL 3 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P21
Unit cell:
a: 49.576Å b: 50.348Å c: 111.072Å
α: 90° β: 98.62° γ: 90°
R-values:
R R work R free
0.173 0.172 0.2
Expression system: Escherichia coli

Quick links

Citations

4 review citations

Cyclic di-GMP: the first 25 years of a universal bacterial second messenger.
Römling et al. (2013)
3 more

2 mentions without citation

Structural insight of a concentration-dependent mechanism by which YdiV inhibits Escherichia coli flagellum biogenesis and motility.
Li et al. (2012)
1 more