Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YKL    

Bonds between two atoms of the molecule

Total Number of Bonds: 131


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CL30 C29 CL C sing 1.74 N N
2 C29 C31 C C doub 1.38 N Y
3 C29 C28 C C sing 1.38 N Y
4 C31 C32 C C sing 1.38 N Y
5 C28 C27 C C doub 1.39 N Y
6 C32 C33 C C doub 1.39 N Y
7 C27 C33 C C sing 1.38 N Y
8 C27 C26 C C sing 1.51 N N
9 C33 C23 C C sing 1.5 N N
10 C26 C25 C C sing 1.53 N N
11 C23 C22 C C sing 1.55 N N
12 C23 C34 C C sing 1.52 N N
13 C23 C24 C C sing 1.52 N N
14 O21 C22 O C sing 1.42 N N
15 O21 C20 O C sing 1.35 N N
16 C25 C24 C C sing 1.52 N N
17 C34 N35 C N sing 1.49 N N
18 C6 N5 C N sing 1.47 N N
19 C20 C19 C C doub 1.4 N Y
20 C20 C67 C C sing 1.47 N Y
21 C19 C18 C C sing 1.37 N Y
22 C39 C40 C C sing 1.54 N N
23 C39 C37 C C sing 1.54 N N
24 N5 C7 N C sing 1.34 N Y
25 N5 N4 N N sing 1.4 N Y
26 N35 C67 N C sing 1.4 N N
27 N35 C36 N C sing 1.48 N N
28 C67 C68 C C doub 1.39 N Y
29 C18 C17 C C doub 1.41 N Y
30 C7 C8 C C doub 1.38 N Y
31 C40 O41 C O sing 1.43 N N
32 C36 C37 C C sing 1.52 N N
33 C37 C42 C C sing 1.54 N N
34 N4 C3 N C doub 1.31 N Y
35 C68 C17 C C sing 1.39 N Y
36 C17 C15 C C sing 1.48 N N
37 C8 C3 C C sing 1.42 N Y
38 C8 C9 C C sing 1.47 N N
39 O41 C42 O C sing 1.44 N N
40 C65 C63 C C sing 1.53 N N
41 N14 C15 N C sing 1.34 N N
42 N14 S12 N S doub 1.5 N N
43 N11 C9 N C sing 1.35 N N
44 N11 S12 N S sing 1.65 N N
45 C3 O2 C O sing 1.36 N N
46 C42 C44 C C sing 1.51 N N
47 C15 O16 C O doub 1.22 N N
48 C63 C62 C C sing 1.52 N N
49 C63 C66 C C sing 1.53 N N
50 C9 O10 C O doub 1.22 N N
51 C62 C61 C C sing 1.5 N N
52 S12 C66 S C sing 1.82 N N
53 S12 O13 S O doub 1.42 N N
54 C61 C59 C C doub 1.32 Z N
55 F60 C59 F C sing 1.35 N N
56 C59 C44 C C sing 1.5 N N
57 O2 C1 O C sing 1.43 N N
58 C44 O57 C O sing 1.43 N N
59 C44 C45 C C sing 1.54 N N
60 O57 C58 O C sing 1.43 N N
61 C45 N46 C N sing 1.47 N N
62 C56 N46 C N sing 1.47 N N
63 C56 C54 C C sing 1.53 N N
64 C53 O52 C O sing 1.43 N N
65 C53 C54 C C sing 1.53 N N
66 O52 C51 O C sing 1.43 N N
67 N46 C47 N C sing 1.47 N N
68 C54 N49 C N sing 1.47 N N
69 C51 C50 C C sing 1.53 N N
70 N49 C50 N C sing 1.47 N N
71 N49 C48 N C sing 1.47 N N
72 C47 C48 C C sing 1.53 N N
73 C1 H1 C H sing 1.09 N N
74 C1 H2 C H sing 1.09 N N
75 C1 H3 C H sing 1.09 N N
76 C6 H4 C H sing 1.09 N N
77 C6 H5 C H sing 1.09 N N
78 C6 H6 C H sing 1.09 N N
79 C7 H7 C H sing 1.08 N N
80 C18 H8 C H sing 1.08 N N
81 C19 H9 C H sing 1.08 N N
82 C24 H10 C H sing 1.09 N N
83 C24 H11 C H sing 1.09 N N
84 C31 H12 C H sing 1.08 N N
85 C32 H13 C H sing 1.08 N N
86 C34 H14 C H sing 1.07 N N
87 C34 H15 C H sing 1.1 N N
88 C36 H16 C H sing 1.09 N N
89 C36 H17 C H sing 1.09 N N
90 C37 H18 C H sing 1.11 N N
91 C39 H19 C H sing 1.08 N N
92 C39 H20 C H sing 1.09 N N
93 C40 H21 C H sing 1.09 N N
94 C40 H22 C H sing 1.09 N N
95 N11 H23 N H sing 0.97 N N
96 C22 H26 C H sing 1.09 N N
97 C22 H27 C H sing 1.09 N N
98 C25 H28 C H sing 1.09 N N
99 C25 H29 C H sing 1.09 N N
100 C26 H30 C H sing 1.09 N N
101 C26 H31 C H sing 1.09 N N
102 C28 H32 C H sing 1.08 N N
103 C42 H33 C H sing 1.09 N N
104 C45 H34 C H sing 1.09 N N
105 C45 H35 C H sing 1.09 N N
106 C47 H37 C H sing 1.09 N N
107 C47 H38 C H sing 1.09 N N
108 C48 H39 C H sing 1.09 N N
109 C48 H40 C H sing 1.09 N N
110 C50 H42 C H sing 1.09 N N
111 C50 H43 C H sing 1.09 N N
112 C51 H44 C H sing 1.09 N N
113 C51 H45 C H sing 1.09 N N
114 C53 H46 C H sing 1.09 N N
115 C53 H47 C H sing 1.09 N N
116 C54 H48 C H sing 1.09 N N
117 C56 H49 C H sing 1.09 N N
118 C56 H50 C H sing 1.09 N N
119 C58 H51 C H sing 1.09 N N
120 C58 H52 C H sing 1.09 N N
121 C58 H53 C H sing 1.09 N N
122 C61 H54 C H sing 1.08 N N
123 C62 H55 C H sing 1.09 N N
124 C62 H56 C H sing 1.09 N N
125 C63 H57 C H sing 1.09 N N
126 C65 H58 C H sing 1.09 N N
127 C65 H59 C H sing 1.09 N N
128 C65 H60 C H sing 1.09 N N
129 C66 H61 C H sing 1.09 N N
130 C66 H62 C H sing 1.09 N N
131 C68 H63 C H sing 1.08 N N