Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XYQ    

Bonds between two atoms of the molecule

Total Number of Bonds: 67


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O5 CH O C doub 1.21 N N
2 CH CH3 C C sing 1.51 N N
3 CH OH C O sing 1.34 N N
4 CH3 HH31 C H sing 1.09 N N
5 CH3 HH32 C H sing 1.09 N N
6 CH3 HH33 C H sing 1.09 N N
7 OH C1N O C sing 1.45 N N
8 C1N C2N C C sing 1.54 N N
9 C1N O4N C O sing 1.43 N N
10 C1N H1N C H sing 1.09 N N
11 C2N C3N C C sing 1.55 N N
12 C2N O2N C O sing 1.43 N N
13 C2N H2N C H sing 1.09 N N
14 C3N O3N C O sing 1.43 N N
15 C3N C4N C C sing 1.55 N N
16 C3N H3N C H sing 1.09 N N
17 O3N HO3N O H sing 0.97 N N
18 O2N HO2N O H sing 0.97 N N
19 O4N C4N O C sing 1.44 N N
20 C4N C5N C C sing 1.53 N N
21 C4N H4N C H sing 1.09 N N
22 C5N O5N C O sing 1.43 N N
23 C5N H5N1 C H sing 1.09 N N
24 C5N H5N2 C H sing 1.09 N N
25 O5N PN O P sing 1.61 N N
26 PN ON2 P O sing 1.61 N N
27 PN ON1 P O doub 1.48 N N
28 PN ON3 P O sing 1.61 N N
29 ON2 HON2 O H sing 0.97 N N
30 ON3 PA O P sing 1.61 N N
31 PA OA2 P O sing 1.61 N N
32 PA O5A P O sing 1.61 N N
33 PA OA1 P O doub 1.48 N N
34 OA2 HOA2 O H sing 0.97 N N
35 O5A C5A O C sing 1.43 N N
36 C5A C4A C C sing 1.53 N N
37 C5A H5A1 C H sing 1.09 N N
38 C5A H5A2 C H sing 1.09 N N
39 C4A O4A C O sing 1.44 N N
40 C4A C3A C C sing 1.54 N N
41 C4A H4A C H sing 1.09 N N
42 O4A C1A O C sing 1.44 N N
43 C1A N9 C N sing 1.47 N N
44 C1A C2A C C sing 1.55 N N
45 C1A H1A C H sing 1.09 N N
46 N9 C8 N C sing 1.36 N Y
47 N9 C4 N C sing 1.37 N Y
48 C8 N7 C N doub 1.3 N Y
49 C8 H8 C H sing 1.08 N N
50 N7 C5 N C sing 1.35 N Y
51 C5 C4 C C sing 1.41 N Y
52 C5 C6 C C doub 1.41 N Y
53 C4 N3 C N doub 1.33 N Y
54 N3 C2 N C sing 1.32 N Y
55 C2 N1 C N doub 1.32 N Y
56 C2 H2 C H sing 1.08 N N
57 N1 C6 N C sing 1.33 N Y
58 C6 N6 C N sing 1.38 N N
59 N6 HN61 N H sing 0.97 N N
60 N6 HN62 N H sing 0.97 N N
61 C2A C3A C C sing 1.55 N N
62 C2A O2A C O sing 1.43 N N
63 C2A H2A C H sing 1.09 N N
64 C3A O3A C O sing 1.43 N N
65 C3A H3A C H sing 1.09 N N
66 O3A HO3A O H sing 0.97 N N
67 O2A HO2A O H sing 0.97 N N