Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : XBK    

Bonds between two atoms of the molecule

Total Number of Bonds: 95


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N C9 N C sing 1.47 N N
2 C1 O1 C O sing 1.43 N N
3 C1 C2 C C sing 1.54 N N
4 C1 C33 C C sing 1.53 N N
5 C2 C3 C C sing 1.51 N N
6 C2 C4 C C sing 1.53 N N
7 O2 C3 O C sing 1.34 N N
8 C3 O3 C O doub 1.21 N N
9 C4 C5 C C sing 1.52 N N
10 C4 O12 C O sing 1.44 N N
11 O4 C6 O C sing 1.43 N N
12 O4 C7 O C sing 1.43 N N
13 C5 C6 C C sing 1.53 N N
14 O5 C8 O C sing 1.43 N N
15 C6 C13 C C sing 1.5 N N
16 O6 C10 O C sing 1.43 N N
17 C7 O7 C O sing 1.43 N N
18 C7 C8 C C sing 1.53 N N
19 O7 C11 O C sing 1.43 N N
20 C8 C9 C C sing 1.53 N N
21 O8 C22 O C sing 1.43 N N
22 O8 C24 O C sing 1.35 N N
23 C9 C10 C C sing 1.53 N N
24 O9 C24 O C doub 1.22 N N
25 C10 C11 C C sing 1.53 N N
26 O10 C30 O C sing 1.43 N N
27 C11 C12 C C sing 1.53 N N
28 O11 C32 O C sing 1.43 N N
29 O12 C32 O C sing 1.43 N N
30 C13 C14 C C doub 1.33 N N
31 C14 C15 C C sing 1.46 N N
32 C15 C16 C C doub 1.34 N N
33 C16 C17 C C sing 1.42 N N
34 C17 C18 C C doub 1.34 N N
35 C18 C19 C C sing 1.46 N N
36 C19 C20 C C doub 1.34 N N
37 C20 C21 C C sing 1.5 N N
38 C21 C22 C C sing 1.53 N N
39 C22 C23 C C sing 1.53 N N
40 C24 C25 C C sing 1.42 N N
41 C25 C26 C C doub 1.35 N N
42 C26 C27 C C sing 1.47 N N
43 C27 C28 C C doub 1.33 N N
44 C28 C29 C C sing 1.51 N N
45 C29 C30 C C sing 1.53 N N
46 C30 C31 C C sing 1.53 N N
47 C31 C32 C C sing 1.52 N N
48 C32 C33 C C sing 1.53 N N
49 N HN N H sing 1.01 N N
50 N HNA N H sing 1.01 N N
51 C1 H1 C H sing 1.09 N N
52 O1 HO1 O H sing 0.97 E N
53 C2 H2 C H sing 1.09 N N
54 C4 H4 C H sing 1.09 N N
55 C5 H5 C H sing 1.09 N N
56 C5 H5A C H sing 1.09 E N
57 O5 HO5 O H sing 0.97 N N
58 C6 H6 C H sing 1.09 N N
59 O6 HO6 O H sing 0.97 N N
60 C7 H7 C H sing 1.09 E N
61 C8 H8 C H sing 1.09 N N
62 C9 H9 C H sing 1.09 N N
63 C10 H10 C H sing 1.09 N N
64 O10 HO10 O H sing 0.97 E N
65 C11 H11 C H sing 1.09 N N
66 C12 H12 C H sing 1.09 N N
67 C12 H12A C H sing 1.09 N N
68 C12 H12B C H sing 1.09 N N
69 C13 H13 C H sing 1.09 N N
70 C14 H14 C H sing 1.08 N N
71 C15 H15 C H sing 1.09 N N
72 C16 H16 C H sing 1.08 N N
73 C17 H17 C H sing 1.08 N N
74 C18 H18 C H sing 1.09 N N
75 C19 H19 C H sing 1.07 N N
76 C20 H20 C H sing 1.09 N N
77 C21 H21 C H sing 1.09 E N
78 C21 H21A C H sing 1.09 N N
79 C22 H22 C H sing 1.09 N N
80 C23 H23 C H sing 1.09 N N
81 C23 H23A C H sing 1.09 E N
82 C23 H23B C H sing 1.09 N N
83 C25 H25 C H sing 1.08 N N
84 C26 H26 C H sing 1.08 N N
85 C27 H27 C H sing 1.08 N N
86 C28 H28 C H sing 1.08 N N
87 C29 H29 C H sing 1.09 N N
88 C29 H29A C H sing 1.09 N N
89 C30 H30 C H sing 1.09 N N
90 C31 H31 C H sing 1.09 N N
91 C31 H31A C H sing 1.09 N N
92 C33 H33 C H sing 1.09 N N
93 C33 H33A C H sing 1.09 N N
94 O2 HO2 O H sing 0.97 N N
95 O11 HO11 O H sing 0.97 N N