Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VDX    

Bonds between two atoms of the molecule

Total Number of Bonds: 76


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C3 O C sing 1.43 N N
2 O2 HO2 O H sing 0.97 N N
3 O3 C25 O C sing 1.43 N N
4 O3 HO3 O H sing 0.97 N N
5 C1 C2 C C sing 1.53 N N
6 C1 C10 C C sing 1.52 N N
7 C1 O1 C O sing 1.43 N N
8 C1 H11 C H sing 1.09 N N
9 C2 C3 C C sing 1.53 N N
10 C2 H21 C H sing 1.09 N N
11 C2 H22 C H sing 1.09 N N
12 C3 C4 C C sing 1.53 N N
13 C3 H31 C H sing 1.09 N N
14 C4 C5 C C sing 1.52 N N
15 C4 H41 C H sing 1.09 N N
16 C4 H42 C H sing 1.09 N N
17 C5 C6 C C doub 1.35 Z N
18 C5 C10 C C sing 1.48 N N
19 C6 C7 C C sing 1.46 N N
20 C6 H61 C H sing 1.08 N N
21 C7 C8 C C doub 1.33 E N
22 C7 H71 C H sing 1.08 N N
23 C8 C9 C C sing 1.52 N N
24 C8 C14 C C sing 1.5 N N
25 C9 C11 C C sing 1.53 N N
26 C9 H91 C H sing 1.09 N N
27 C9 H92 C H sing 1.09 N N
28 C10 C19 C C doub 1.33 N N
29 C11 C12 C C sing 1.54 N N
30 C11 H111 C H sing 1.09 N N
31 C11 H112 C H sing 1.09 N N
32 C12 C13 C C sing 1.51 N N
33 C12 H121 C H sing 1.09 N N
34 C12 H122 C H sing 1.09 N N
35 C13 C14 C C sing 1.56 N N
36 C13 C17 C C sing 1.52 N N
37 C13 C18 C C sing 1.53 N N
38 C14 C15 C C sing 1.53 N N
39 C14 H141 C H sing 1.09 N N
40 C15 C16 C C sing 1.55 N N
41 C15 H151 C H sing 1.09 N N
42 C15 H152 C H sing 1.09 N N
43 C16 C17 C C sing 1.55 N N
44 C16 H161 C H sing 1.09 N N
45 C16 H162 C H sing 1.09 N N
46 C17 C20 C C sing 1.53 N N
47 C17 H171 C H sing 1.09 N N
48 C18 H181 C H sing 1.09 N N
49 C18 H182 C H sing 1.09 N N
50 C18 H183 C H sing 1.09 N N
51 C19 H191 C H sing 1.08 N N
52 C19 H192 C H sing 1.08 N N
53 C20 C21 C C sing 1.53 N N
54 C20 C22 C C sing 1.53 N N
55 C20 H201 C H sing 1.09 N N
56 C21 H211 C H sing 1.09 N N
57 C21 H212 C H sing 1.09 N N
58 C21 H213 C H sing 1.09 N N
59 C22 C23 C C sing 1.53 N N
60 C22 H221 C H sing 1.09 N N
61 C22 H222 C H sing 1.09 N N
62 C23 C24 C C sing 1.53 N N
63 C23 H231 C H sing 1.09 N N
64 C23 H232 C H sing 1.09 N N
65 C24 C25 C C sing 1.53 N N
66 C24 H241 C H sing 1.09 N N
67 C24 H242 C H sing 1.09 N N
68 C25 C26 C C sing 1.53 N N
69 C25 C27 C C sing 1.53 N N
70 C26 H261 C H sing 1.09 N N
71 C26 H262 C H sing 1.09 N N
72 C26 H263 C H sing 1.09 N N
73 C27 H271 C H sing 1.09 N N
74 C27 H272 C H sing 1.09 N N
75 C27 H273 C H sing 1.09 N N
76 O1 HO1 O H sing 0.97 N N