Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VDA    

Bonds between two atoms of the molecule

Total Number of Bonds: 82


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C3 O C sing 1.43 N N
2 C1 C2 C C sing 1.53 N N
3 C1 C10 C C sing 1.53 N N
4 C1 O1 C O sing 1.43 N N
5 C2 C3 C C sing 1.53 N N
6 C2 O4 C O sing 1.43 N N
7 C3 C4 C C sing 1.53 N N
8 C4 C5 C C sing 1.51 N N
9 C5 C6 C C doub 1.33 N N
10 C5 C10 C C sing 1.51 N N
11 C6 C7 C C sing 1.47 N N
12 C7 C8 C C doub 1.33 N N
13 C8 C9 C C sing 1.52 N N
14 C8 C14 C C sing 1.5 N N
15 C9 C11 C C sing 1.53 N N
16 C11 C12 C C sing 1.54 N N
17 C12 C13 C C sing 1.5 N N
18 C13 C14 C C sing 1.55 N N
19 C13 C17 C C sing 1.48 E N
20 C13 C18 C C sing 1.53 N N
21 C14 C15 C C sing 1.53 N N
22 C15 C16 C C sing 1.53 N N
23 C16 C17 C C doub 1.32 N N
24 C17 C20 C C sing 1.51 N N
25 C20 C21 C C sing 1.53 N N
26 C20 S22 C S sing 1.81 N N
27 S22 C23 S C sing 1.81 N N
28 C23 C25 C C sing 1.53 N N
29 C25 O3 C O sing 1.43 N N
30 C25 C26 C C sing 1.53 N N
31 C25 C27 C C sing 1.53 N N
32 C26 C29 C C sing 1.53 N N
33 C27 C28 C C sing 1.53 N N
34 O4 C30 O C sing 1.43 N N
35 C30 C31 C C sing 1.53 N N
36 C31 O5 C O sing 1.43 N N
37 O2 HO2 O H sing 0.97 N N
38 C1 H1 C H sing 1.09 N N
39 C2 H2 C H sing 1.09 N N
40 C3 H3 C H sing 1.09 N N
41 C4 H4 C H sing 1.09 N N
42 C4 H4A C H sing 1.09 N N
43 C6 H6 C H sing 1.08 N N
44 C7 H7 C H sing 1.08 N N
45 C9 H9 C H sing 1.09 N N
46 C9 H9A C H sing 1.09 N N
47 C10 H10 C H sing 1.09 N N
48 C10 H10A C H sing 1.09 N N
49 C11 H11 C H sing 1.09 N N
50 C11 H11A C H sing 1.09 N N
51 C12 H12 C H sing 1.09 N N
52 C12 H12A C H sing 1.09 N N
53 C14 H14 C H sing 1.09 N N
54 C15 H15 C H sing 1.09 N N
55 C15 H15A C H sing 1.09 N N
56 C16 H16 C H sing 1.08 N N
57 C18 H18 C H sing 1.09 N N
58 C18 H18A C H sing 1.09 N N
59 C18 H18B C H sing 1.09 N N
60 C20 H20 C H sing 1.09 N N
61 C21 H21 C H sing 1.09 N N
62 C21 H21A C H sing 1.09 N N
63 C21 H21B C H sing 1.09 N N
64 C23 H23 C H sing 1.09 N N
65 C23 H23A C H sing 1.09 N N
66 O3 HO3 O H sing 0.97 N N
67 C26 H26 C H sing 1.09 N N
68 C26 H26A C H sing 1.09 N N
69 C27 H27 C H sing 1.09 N N
70 C27 H27A C H sing 1.09 N N
71 O1 HO1 O H sing 0.97 N N
72 C30 H30 C H sing 1.09 N N
73 C30 H30A C H sing 1.09 N N
74 C31 H31 C H sing 1.09 N N
75 C31 H31A C H sing 1.09 N N
76 O5 HO5 O H sing 0.97 N N
77 C29 H29 C H sing 1.09 N N
78 C29 H29A C H sing 1.09 N N
79 C29 H29B C H sing 1.09 N N
80 C28 H28 C H sing 1.09 N N
81 C28 H28A C H sing 1.09 N N
82 C28 H28B C H sing 1.09 N N