Chemical Components in the PDB

pdbe.org/chem
spacer

PDBeChem : Chemical Bonds

 Molecule : TPV    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C2 O C sing 1.34 N N
2 O1 C6 O C sing 1.43 N N
3 C2 C3 C C sing 1.41 N N
4 C2 O7 C O doub 1.22 N N
5 C3 C4 C C doub 1.35 N N
6 C3 C20 C C sing 1.51 N N
7 C4 C5 C C sing 1.51 N N
8 C4 O8 C O sing 1.35 N N
9 C5 C6 C C sing 1.53 N N
10 C5 H51 C H sing 1.09 N N
11 C5 H52 C H sing 1.09 N N
12 C6 C9 C C sing 1.53 N N
13 C6 C12 C C sing 1.53 N N
14 O8 HO81 O H sing 0.97 N N
15 C9 C10 C C sing 1.53 N N
16 C9 H91 C H sing 1.09 N N
17 C9 H92 C H sing 1.09 N N
18 C10 C11 C C sing 1.53 N N
19 C10 H101 C H sing 1.09 N N
20 C10 H102 C H sing 1.09 N N
21 C11 H111 C H sing 1.09 N N
22 C11 H112 C H sing 1.09 N N
23 C11 H113 C H sing 1.09 N N
24 C12 C13 C C sing 1.53 N N
25 C12 H121 C H sing 1.09 N N
26 C12 H122 C H sing 1.09 N N
27 C13 C14 C C sing 1.51 N N
28 C13 H131 C H sing 1.09 N N
29 C13 H132 C H sing 1.09 N N
30 C14 C15 C C doub 1.38 N Y
31 C14 C19 C C sing 1.38 N Y
32 C15 C16 C C sing 1.38 N Y
33 C15 H151 C H sing 1.08 N N
34 C16 C17 C C doub 1.38 N Y
35 C16 H161 C H sing 1.08 N N
36 C17 C18 C C sing 1.38 N Y
37 C17 H171 C H sing 1.08 N N
38 C18 C19 C C doub 1.38 N Y
39 C18 H181 C H sing 1.08 N N
40 C19 H191 C H sing 1.08 N N
41 C20 C21 C C sing 1.53 N N
42 C20 C23 C C sing 1.51 N N
43 C20 H201 C H sing 1.09 N N
44 C21 C22 C C sing 1.53 N N
45 C21 H211 C H sing 1.09 N N
46 C21 H212 C H sing 1.09 N N
47 C22 H221 C H sing 1.09 N N
48 C22 H222 C H sing 1.09 N N
49 C22 H223 C H sing 1.09 N N
50 C23 C24 C C doub 1.38 N Y
51 C23 C29 C C sing 1.38 N Y
52 C24 C25 C C sing 1.38 N Y
53 C24 H241 C H sing 1.08 N N
54 C25 C26 C C doub 1.38 N Y
55 C25 H251 C H sing 1.08 N N
56 C26 C27 C C sing 1.39 N Y
57 C26 H261 C H sing 1.08 N N
58 C27 N28 C N sing 1.4 N N
59 C27 C29 C C doub 1.39 N Y
60 N28 S30 N S sing 1.66 N N
61 N28 H281 N H sing 0.97 N N
62 C29 H291 C H sing 1.08 N N
63 S30 O31 S O doub 1.42 N N
64 S30 O32 S O doub 1.42 N N
65 S30 C33 S C sing 1.76 N N
66 C33 N34 C N doub 1.32 N Y
67 C33 C38 C C sing 1.38 N Y
68 N34 C35 N C sing 1.32 N Y
69 C35 C36 C C doub 1.38 N Y
70 C35 H351 C H sing 1.08 N N
71 C36 C37 C C sing 1.39 N Y
72 C36 C39 C C sing 1.51 N N
73 C37 C38 C C doub 1.39 N Y
74 C37 H371 C H sing 1.08 N N
75 C38 H381 C H sing 1.08 N N
76 C39 F40 C F sing 1.4 N N
77 C39 F41 C F sing 1.4 N N
78 C39 F42 C F sing 1.4 N N