Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : THP    

Bonds between two atoms of the molecule

Total Number of Bonds: 42


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P2 O4P P O doub 1.48 N N
2 P2 O5P P O sing 1.61 N N
3 P2 O6P P O sing 1.61 N N
4 P2 O5' P O sing 1.61 N N
5 O5P HOP5 O H sing 0.97 N N
6 O6P HOP6 O H sing 0.97 N N
7 P1 O1P P O doub 1.48 N N
8 P1 O2P P O sing 1.61 N N
9 P1 O3P P O sing 1.61 N N
10 P1 O3' P O sing 1.61 N N
11 O2P HOP2 O H sing 0.97 N N
12 O3P HOP3 O H sing 0.97 N N
13 O5' C5' O C sing 1.43 N N
14 C5' C4' C C sing 1.53 N N
15 C5' H5'1 C H sing 1.09 N N
16 C5' H5'2 C H sing 1.09 N N
17 C4' O4' C O sing 1.45 N N
18 C4' C3' C C sing 1.55 N N
19 C4' H4' C H sing 1.09 N N
20 O4' C1' O C sing 1.44 N N
21 C3' O3' C O sing 1.43 N N
22 C3' C2' C C sing 1.55 N N
23 C3' H3' C H sing 1.09 N N
24 C2' C1' C C sing 1.54 N N
25 C2' H2'1 C H sing 1.09 N N
26 C2' H2'2 C H sing 1.09 N N
27 C1' N1 C N sing 1.46 N N
28 C1' H1' C H sing 1.09 N N
29 N1 C2 N C sing 1.35 N N
30 N1 C6 N C sing 1.37 N N
31 C2 O2 C O doub 1.21 N N
32 C2 N3 C N sing 1.35 N N
33 N3 C4 N C sing 1.35 N N
34 N3 H3 N H sing 0.97 N N
35 C4 O4 C O doub 1.22 N N
36 C4 C5 C C sing 1.41 N N
37 C5 C5M C C sing 1.51 N N
38 C5 C6 C C doub 1.35 N N
39 C5M H51 C H sing 1.09 N N
40 C5M H52 C H sing 1.09 N N
41 C5M H53 C H sing 1.09 N N
42 C6 H6 C H sing 1.08 N N