Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : RIT    

Bonds between two atoms of the molecule

Total Number of Bonds: 101


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.34 N Y
2 C1 N5 C N sing 1.32 N Y
3 C1 H1 C H sing 1.08 N N
4 C2 S3 C S sing 1.76 N Y
5 C2 C6 C C sing 1.51 N N
6 S3 C4 S C sing 1.71 N Y
7 C4 N5 C N doub 1.29 N Y
8 C4 H4 C H sing 1.08 N N
9 C6 O7 C O sing 1.45 N N
10 C6 H61 C H sing 1.09 N N
11 C6 H62A C H sing 1.09 N N
12 O7 C10 O C sing 1.35 N N
13 C10 N11 C N sing 1.35 N N
14 C10 O24 C O doub 1.22 N N
15 N11 C12 N C sing 1.47 N N
16 N11 H11 N H sing 0.97 N N
17 C12 C13 C C sing 1.53 N N
18 C12 C26 C C sing 1.53 N N
19 C12 H12 C H sing 1.09 N N
20 C13 C14 C C sing 1.53 N N
21 C13 O41 C O sing 1.43 N N
22 C13 H13 C H sing 1.09 N N
23 C14 C15 C C sing 1.53 N N
24 C14 H141 C H sing 1.09 N N
25 C14 H142 C H sing 1.09 N N
26 C15 C44 C C sing 1.53 N N
27 C15 N58 C N sing 1.47 N N
28 C15 H15 C H sing 1.09 N N
29 C18 C19 C C sing 1.51 N N
30 C18 N58 C N sing 1.35 N N
31 C18 O61 C O doub 1.21 N N
32 C19 N20 C N sing 1.46 N N
33 C19 C62 C C sing 1.53 N N
34 C19 H19 C H sing 1.09 N N
35 N20 C21 N C sing 1.35 N N
36 N20 H20 N H sing 0.97 N N
37 C21 N74 C N sing 1.35 N N
38 C21 O76 C O doub 1.22 N N
39 C26 C28 C C sing 1.51 N N
40 C26 H261 C H sing 1.09 N N
41 C26 H262 C H sing 1.09 N N
42 C28 C31 C C doub 1.38 N Y
43 C28 C35 C C sing 1.38 N Y
44 C31 C32 C C sing 1.38 N Y
45 C31 H31 C H sing 1.08 N N
46 C32 C33 C C doub 1.38 N Y
47 C32 H32 C H sing 1.08 N N
48 C33 C34 C C sing 1.38 N Y
49 C33 H33 C H sing 1.08 N N
50 C34 C35 C C doub 1.38 N Y
51 C34 H34 C H sing 1.08 N N
52 C35 H35 C H sing 1.08 N N
53 O41 HO4 O H sing 0.97 N N
54 C44 C45 C C sing 1.51 N N
55 C44 H441 C H sing 1.09 N N
56 C44 H442 C H sing 1.09 N N
57 C45 C48 C C doub 1.38 N Y
58 C45 C52 C C sing 1.38 N Y
59 C48 C49 C C sing 1.38 N Y
60 C48 H48 C H sing 1.08 N N
61 C49 C50 C C doub 1.38 N Y
62 C49 H49 C H sing 1.08 N N
63 C50 C51 C C sing 1.38 N Y
64 C50 H50 C H sing 1.08 N N
65 C51 C52 C C doub 1.38 N Y
66 C51 H51 C H sing 1.08 N N
67 C52 H52 C H sing 1.08 N N
68 N58 H58 N H sing 0.97 N N
69 C62 C64 C C sing 1.53 N N
70 C62 C68 C C sing 1.53 N N
71 C62 H62 C H sing 1.09 N N
72 C64 H641 C H sing 1.09 N N
73 C64 H642 C H sing 1.09 N N
74 C64 H643 C H sing 1.09 N N
75 C68 H681 C H sing 1.09 N N
76 C68 H682 C H sing 1.09 N N
77 C68 H683 C H sing 1.09 N N
78 N74 C75 N C sing 1.46 N N
79 N74 C95 N C sing 1.47 N N
80 C75 C77 C C sing 1.51 N N
81 C75 H751 C H sing 1.09 N N
82 C75 H752 C H sing 1.09 N N
83 C77 C80 C C doub 1.34 N Y
84 C77 N83 C N sing 1.32 N Y
85 C80 S81 C S sing 1.76 N Y
86 C80 H80 C H sing 1.08 N N
87 S81 C82 S C sing 1.71 N Y
88 C82 N83 C N doub 1.29 N Y
89 C82 C85 C C sing 1.51 N N
90 C85 C86 C C sing 1.53 N N
91 C85 C90 C C sing 1.53 N N
92 C85 H85 C H sing 1.09 N N
93 C86 H861 C H sing 1.09 N N
94 C86 H862 C H sing 1.09 N N
95 C86 H863 C H sing 1.09 N N
96 C90 H901 C H sing 1.09 N N
97 C90 H902 C H sing 1.09 N N
98 C90 H903 C H sing 1.09 N N
99 C95 H951 C H sing 1.09 N N
100 C95 H952 C H sing 1.09 N N
101 C95 H953 C H sing 1.09 N N