Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : Q0L    

Bonds between two atoms of the molecule

Total Number of Bonds: 104


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C10 C08 C C sing 1.55 N N
2 C10 N11 C N sing 1.47 N N
3 C12 C13 C C doub 1.38 N Y
4 C12 N11 C N sing 1.32 N Y
5 C13 C14 C C sing 1.4 N Y
6 C14 C15 C C doub 1.4 N Y
7 C14 C17 C C sing 1.48 N N
8 C15 C16 C C sing 1.38 N Y
9 C16 N11 C N doub 1.32 N Y
10 C17 C33 C C doub 1.37 N Y
11 C17 N18 C N sing 1.36 N Y
12 C20 C33 C C sing 1.4 N Y
13 C20 N19 C N doub 1.31 N Y
14 C20 N21 C N sing 1.4 N N
15 C22 C23 C C sing 1.51 N N
16 C22 N21 C N sing 1.35 N N
17 C22 O32 C O doub 1.21 N N
18 C23 C24 C C sing 1.53 N N
19 C24 C25 C C sing 1.51 N N
20 C04 C05 C C sing 1.53 N N
21 C04 O03 C O sing 1.43 N N
22 C05 C06 C C sing 1.54 N N
23 C05 O35 C O sing 1.44 N N
24 C06 C08 C C sing 1.55 N N
25 C06 O07 C O sing 1.43 N N
26 C08 O09 C O sing 1.43 N N
27 C25 C26 C C doub 1.38 N Y
28 C25 C31 C C sing 1.38 N Y
29 C26 C27 C C sing 1.38 N Y
30 C27 C28 C C doub 1.38 N Y
31 C28 C30 C C sing 1.38 N Y
32 C28 CL29 C CL sing 1.74 N N
33 C30 C31 C C doub 1.38 N Y
34 C33 C34 C C sing 1.51 N N
35 C39 C40 C C sing 1.53 N N
36 C39 O38 C O sing 1.43 N N
37 C40 C41 C C sing 1.54 N N
38 C40 O56 C O sing 1.44 N N
39 C41 C43 C C sing 1.54 N N
40 C41 O42 C O sing 1.43 N N
41 C43 C45 C C sing 1.54 N N
42 C43 O44 C O sing 1.43 N N
43 C45 N46 C N sing 1.46 N N
44 C45 O56 C O sing 1.44 N N
45 C47 C48 C C doub 1.4 N Y
46 C47 N46 C N sing 1.37 N Y
47 C47 N53 C N sing 1.33 N Y
48 C48 C49 C C sing 1.41 N Y
49 C48 N54 C N sing 1.36 N Y
50 C49 N50 C N sing 1.38 N N
51 C49 N51 C N doub 1.33 N Y
52 C52 N51 C N sing 1.32 N Y
53 C52 N53 C N doub 1.32 N Y
54 C55 N46 C N sing 1.36 N Y
55 C55 N54 C N doub 1.3 N Y
56 N18 N19 N N sing 1.4 N Y
57 O01 P02 O P doub 1.48 N N
58 O03 P02 O P sing 1.61 N N
59 O36 P02 O P sing 1.61 N N
60 O36 P37 O P sing 1.61 N N
61 O38 P37 O P sing 1.61 N N
62 O57 P37 O P doub 1.48 N N
63 O58 P37 O P sing 1.61 N N
64 O59 P02 O P sing 1.61 N N
65 C10 H1 C H sing 1.09 N N
66 C12 H3 C H sing 1.08 N N
67 C13 H4 C H sing 1.08 N N
68 C15 H5 C H sing 1.08 N N
69 C16 H6 C H sing 1.08 N N
70 C23 H7 C H sing 1.09 N N
71 C23 H8 C H sing 1.09 N N
72 C24 H9 C H sing 1.09 N N
73 C24 H10 C H sing 1.09 N N
74 C04 H11 C H sing 1.09 N N
75 C04 H12 C H sing 1.09 N N
76 C05 H13 C H sing 1.09 N N
77 C06 H14 C H sing 1.09 N N
78 C08 H15 C H sing 1.09 N N
79 C26 H16 C H sing 1.08 N N
80 C27 H17 C H sing 1.08 N N
81 C30 H18 C H sing 1.08 N N
82 C31 H19 C H sing 1.08 N N
83 C34 H20 C H sing 1.09 N N
84 C34 H21 C H sing 1.09 N N
85 C34 H22 C H sing 1.09 N N
86 C39 H23 C H sing 1.09 N N
87 C39 H24 C H sing 1.09 N N
88 C40 H25 C H sing 1.09 N N
89 C41 H26 C H sing 1.09 N N
90 C43 H27 C H sing 1.09 N N
91 C45 H28 C H sing 1.09 N N
92 C52 H29 C H sing 1.08 N N
93 C55 H30 C H sing 1.08 N N
94 N18 H31 N H sing 0.97 N N
95 N21 H32 N H sing 0.97 N N
96 N50 H33 N H sing 0.97 N N
97 N50 H34 N H sing 0.97 N N
98 O07 H35 O H sing 0.97 N N
99 O09 H36 O H sing 0.97 N N
100 O42 H38 O H sing 0.97 N N
101 O44 H39 O H sing 0.97 N N
102 O58 H40 O H sing 0.97 N N
103 O59 H41 O H sing 0.97 N N
104 C10 O35 C O sing 1.44 N N