Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : PT9    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C8 C9 C C doub N Y
2 C8 C7 C C sing N Y
3 C9 C10 C C sing N Y
4 C7 C6 C C doub N Y
5 C12 C13 C C doub N Y
6 C12 C11 C C sing N Y
7 C10 C11 C C sing N N
8 C10 N3 C N doub N Y
9 C13 C14 C C sing N Y
10 C11 N4 C N doub N Y
11 C6 N3 C N sing N Y
12 C6 N2 C N sing N N
13 N3 PT1 N PT sing N N
14 N2 C5 N C sing N N
15 C14 C15 C C doub N Y
16 N4 C15 N C sing N Y
17 N4 PT1 N PT sing N N
18 C15 N5 C N sing N N
19 C5 C4 C C sing N Y
20 C5 N1 C N doub N Y
21 PT1 N1 PT N sing N N
22 PT1 N6 PT N sing N N
23 C4 C3 C C doub N Y
24 N1 C1 N C sing N Y
25 N5 C16 N C sing N N
26 C3 C2 C C sing N Y
27 N6 C16 N C doub N Y
28 N6 C20 N C sing N Y
29 C16 C17 C C sing N Y
30 C1 C2 C C doub N Y
31 C20 C19 C C doub N Y
32 C17 C18 C C doub N Y
33 C19 C18 C C sing N Y
34 C2 H1 C H sing N N
35 C7 H2 C H sing N N
36 C8 H3 C H sing N N
37 C9 H4 C H sing N N
38 C1 H5 C H sing N N
39 C3 H6 C H sing N N
40 C4 H7 C H sing N N
41 C12 H8 C H sing N N
42 C13 H9 C H sing N N
43 C14 H10 C H sing N N
44 C17 H11 C H sing N N
45 C18 H12 C H sing N N
46 C19 H13 C H sing N N
47 C20 H14 C H sing N N
48 N5 H15 N H sing N N
49 N2 H16 N H sing N N