Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : PGV    

Bonds between two atoms of the molecule

Total Number of Bonds: 127


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O11 P O sing 1.61 N N
2 P O12 P O sing 1.61 N N
3 P O13 P O doub 1.48 N N
4 P O14 P O sing 1.61 N N
5 C01 C02 C C sing 1.53 N N
6 C01 O03 C O sing 1.45 N N
7 C01 H011 C H sing 1.09 N N
8 C01 H012 C H sing 1.09 N N
9 C02 C03 C C sing 1.53 N N
10 C02 O01 C O sing 1.45 N N
11 C02 H02 C H sing 1.09 N N
12 C03 O11 C O sing 1.43 N N
13 C03 H031 C H sing 1.09 N N
14 C03 H032 C H sing 1.09 N N
15 C04 C05 C C sing 1.53 N N
16 C04 O12 C O sing 1.43 N N
17 C04 H041 C H sing 1.09 N N
18 C04 H042 C H sing 1.09 N N
19 C05 C06 C C sing 1.53 N N
20 C05 O05 C O sing 1.43 N N
21 C05 H05 C H sing 1.09 N N
22 C06 O06 C O sing 1.43 N N
23 C06 H061 C H sing 1.09 N N
24 C06 H062 C H sing 1.09 N N
25 O01 C1 O C sing 1.34 N N
26 O02 C1 O C doub 1.21 N N
27 O03 C19 O C sing 1.34 N N
28 O04 C19 O C doub 1.21 N N
29 O05 H1 O H sing 0.97 N N
30 O06 H06 O H sing 0.97 N N
31 O14 H14 O H sing 0.97 N N
32 C1 C2 C C sing 1.51 N N
33 C2 C3 C C sing 1.53 N N
34 C2 H21 C H sing 1.09 N N
35 C2 H22 C H sing 1.09 N N
36 C3 C4 C C sing 1.53 N N
37 C3 H31 C H sing 1.09 N N
38 C3 H32 C H sing 1.09 N N
39 C4 C5 C C sing 1.53 N N
40 C4 H41 C H sing 1.09 N N
41 C4 H42 C H sing 1.09 N N
42 C5 C6 C C sing 1.53 N N
43 C5 H51 C H sing 1.09 N N
44 C5 H52 C H sing 1.09 N N
45 C6 C7 C C sing 1.53 N N
46 C6 H61 C H sing 1.09 N N
47 C6 H62 C H sing 1.09 N N
48 C7 C8 C C sing 1.53 N N
49 C7 H71 C H sing 1.09 N N
50 C7 H72 C H sing 1.09 N N
51 C8 C9 C C sing 1.53 N N
52 C8 H81 C H sing 1.09 N N
53 C8 H82 C H sing 1.09 N N
54 C9 C10 C C sing 1.53 N N
55 C9 H91 C H sing 1.09 N N
56 C9 H92 C H sing 1.09 N N
57 C10 C11 C C sing 1.51 N N
58 C10 H101 C H sing 1.09 N N
59 C10 H102 C H sing 1.09 N N
60 C11 C12 C C doub 1.31 Z N
61 C11 H11 C H sing 1.08 N N
62 C12 C13 C C sing 1.51 N N
63 C12 H12 C H sing 1.08 N N
64 C13 C14 C C sing 1.53 N N
65 C13 H131 C H sing 1.09 N N
66 C13 H132 C H sing 1.09 N N
67 C14 C15 C C sing 1.53 N N
68 C14 H141 C H sing 1.09 N N
69 C14 H142 C H sing 1.09 N N
70 C15 C16 C C sing 1.53 N N
71 C15 H151 C H sing 1.09 N N
72 C15 H152 C H sing 1.09 N N
73 C16 C17 C C sing 1.53 N N
74 C16 H161 C H sing 1.09 N N
75 C16 H162 C H sing 1.09 N N
76 C17 C18 C C sing 1.53 N N
77 C17 H171 C H sing 1.09 N N
78 C17 H172 C H sing 1.09 N N
79 C18 H181 C H sing 1.09 N N
80 C18 H182 C H sing 1.09 N N
81 C18 H183 C H sing 1.09 N N
82 C19 C20 C C sing 1.51 N N
83 C20 C21 C C sing 1.53 N N
84 C20 H201 C H sing 1.09 N N
85 C20 H202 C H sing 1.09 N N
86 C21 C22 C C sing 1.53 N N
87 C21 H211 C H sing 1.09 N N
88 C21 H212 C H sing 1.09 N N
89 C22 C23 C C sing 1.53 N N
90 C22 H221 C H sing 1.09 N N
91 C22 H222 C H sing 1.09 N N
92 C23 C24 C C sing 1.53 N N
93 C23 H231 C H sing 1.09 N N
94 C23 H232 C H sing 1.09 N N
95 C24 C25 C C sing 1.53 N N
96 C24 H241 C H sing 1.09 N N
97 C24 H242 C H sing 1.09 N N
98 C25 C26 C C sing 1.53 N N
99 C25 H251 C H sing 1.09 N N
100 C25 H252 C H sing 1.09 N N
101 C26 C27 C C sing 1.53 N N
102 C26 H261 C H sing 1.09 N N
103 C26 H262 C H sing 1.09 N N
104 C27 C28 C C sing 1.53 N N
105 C27 H271 C H sing 1.09 N N
106 C27 H272 C H sing 1.09 N N
107 C28 C29 C C sing 1.53 N N
108 C28 H281 C H sing 1.09 N N
109 C28 H282 C H sing 1.09 N N
110 C29 C30 C C sing 1.53 N N
111 C29 H291 C H sing 1.09 N N
112 C29 H292 C H sing 1.09 N N
113 C30 C31 C C sing 1.53 N N
114 C30 H301 C H sing 1.09 N N
115 C30 H302 C H sing 1.09 N N
116 C31 C32 C C sing 1.53 N N
117 C31 H311 C H sing 1.09 N N
118 C31 H312 C H sing 1.09 N N
119 C32 C33 C C sing 1.53 N N
120 C32 H321 C H sing 1.09 N N
121 C32 H322 C H sing 1.09 N N
122 C33 C34 C C sing 1.53 N N
123 C33 H331 C H sing 1.09 N N
124 C33 H332 C H sing 1.09 N N
125 C34 H341 C H sing 1.09 N N
126 C34 H342 C H sing 1.09 N N
127 C34 H343 C H sing 1.09 N N