Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PEF    

Bonds between two atoms of the molecule

Total Number of Bonds: 120


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 C1 C C sing 1.53 N N
2 C2 C3 C C sing 1.53 N N
3 C2 O2 C O sing 1.45 N N
4 C2 H21 C H sing 1.09 N N
5 C1 O3P C O sing 1.43 N N
6 C1 H11 C H sing 1.09 N N
7 C1 H12 C H sing 1.09 N N
8 N C5 N C sing 1.47 N N
9 N HN1 N H sing 1.01 N N
10 N HN2 N H sing 1.01 N N
11 C3 O3 C O sing 1.45 N N
12 C3 H31 C H sing 1.09 N N
13 C3 H32 C H sing 1.09 N N
14 C4 C5 C C sing 1.53 N N
15 C4 O4P C O sing 1.43 N N
16 C4 H41 C H sing 1.09 N N
17 C4 H42 C H sing 1.09 N N
18 C5 H51 C H sing 1.09 N N
19 C5 H52 C H sing 1.09 N N
20 C10 C11 C C sing 1.51 N N
21 C10 O4 C O doub 1.21 N N
22 C10 O2 C O sing 1.34 N N
23 C11 C12 C C sing 1.53 N N
24 C11 H112 C H sing 1.09 N N
25 C11 H111 C H sing 1.09 N N
26 C12 C13 C C sing 1.53 N N
27 C12 H122 C H sing 1.09 N N
28 C12 H121 C H sing 1.09 N N
29 C13 C14 C C sing 1.53 N N
30 C13 H132 C H sing 1.09 N N
31 C13 H131 C H sing 1.09 N N
32 C14 C15 C C sing 1.53 N N
33 C14 H142 C H sing 1.09 N N
34 C14 H141 C H sing 1.09 N N
35 C15 C16 C C sing 1.53 N N
36 C15 H152 C H sing 1.09 N N
37 C15 H151 C H sing 1.09 N N
38 C16 C17 C C sing 1.53 N N
39 C16 H162 C H sing 1.09 N N
40 C16 H161 C H sing 1.09 N N
41 C17 C18 C C sing 1.53 N N
42 C17 H172 C H sing 1.09 N N
43 C17 H171 C H sing 1.09 N N
44 C18 C19 C C sing 1.53 N N
45 C18 H182 C H sing 1.09 N N
46 C18 H181 C H sing 1.09 N N
47 C19 C20 C C sing 1.53 N N
48 C19 H192 C H sing 1.09 N N
49 C19 H191 C H sing 1.09 N N
50 C20 C21 C C sing 1.53 N N
51 C20 H202 C H sing 1.09 N N
52 C20 H201 C H sing 1.09 N N
53 C21 C22 C C sing 1.53 N N
54 C21 H212 C H sing 1.09 N N
55 C21 H211 C H sing 1.09 N N
56 C22 C23 C C sing 1.53 N N
57 C22 H222 C H sing 1.09 N N
58 C22 H221 C H sing 1.09 N N
59 C23 C24 C C sing 1.53 N N
60 C23 H232 C H sing 1.09 N N
61 C23 H231 C H sing 1.09 N N
62 C24 C25 C C sing 1.53 N N
63 C24 H242 C H sing 1.09 N N
64 C24 H241 C H sing 1.09 N N
65 C25 H252 C H sing 1.09 N N
66 C25 H251 C H sing 1.09 N N
67 C25 H253 C H sing 1.09 N N
68 C30 C31 C C sing 1.51 N N
69 C30 O5 C O doub 1.21 N N
70 C30 O3 C O sing 1.34 N N
71 C31 C32 C C sing 1.53 N N
72 C31 H312 C H sing 1.09 N N
73 C31 H311 C H sing 1.09 N N
74 C32 C33 C C sing 1.53 N N
75 C32 H322 C H sing 1.09 N N
76 C32 H321 C H sing 1.09 N N
77 C33 C34 C C sing 1.53 N N
78 C33 H332 C H sing 1.09 N N
79 C33 H331 C H sing 1.09 N N
80 C34 C35 C C sing 1.53 N N
81 C34 H342 C H sing 1.09 N N
82 C34 H341 C H sing 1.09 N N
83 C35 C36 C C sing 1.53 N N
84 C35 H352 C H sing 1.09 N N
85 C35 H351 C H sing 1.09 N N
86 C36 C37 C C sing 1.53 N N
87 C36 H362 C H sing 1.09 N N
88 C36 H361 C H sing 1.09 N N
89 C37 C38 C C sing 1.53 N N
90 C37 H372 C H sing 1.09 N N
91 C37 H371 C H sing 1.09 N N
92 C38 C39 C C sing 1.53 N N
93 C38 H382 C H sing 1.09 N N
94 C38 H381 C H sing 1.09 N N
95 C39 C40 C C sing 1.53 N N
96 C39 H392 C H sing 1.09 N N
97 C39 H391 C H sing 1.09 N N
98 C40 C41 C C sing 1.53 N N
99 C40 H402 C H sing 1.09 N N
100 C40 H401 C H sing 1.09 N N
101 C41 C42 C C sing 1.53 N N
102 C41 H412 C H sing 1.09 N N
103 C41 H411 C H sing 1.09 N N
104 C42 C43 C C sing 1.53 N N
105 C42 H422 C H sing 1.09 N N
106 C42 H421 C H sing 1.09 N N
107 C43 C44 C C sing 1.53 N N
108 C43 H432 C H sing 1.09 N N
109 C43 H431 C H sing 1.09 N N
110 C44 C45 C C sing 1.53 N N
111 C44 H442 C H sing 1.09 N N
112 C44 H441 C H sing 1.09 N N
113 C45 H452 C H sing 1.09 N N
114 C45 H451 C H sing 1.09 N N
115 C45 H453 C H sing 1.09 N N
116 O1P P O P doub 1.48 N N
117 O2P P O P sing 1.61 N N
118 O2P HOP2 O H sing 0.97 N N
119 O3P P O P sing 1.61 N N
120 O4P P O P sing 1.61 N N