Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : PEE    

Bonds between two atoms of the molecule

Total Number of Bonds: 128


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N C5 N C sing 1.47 N N
2 C5 C4 C C sing 1.53 N N
3 C4 O4P C O sing 1.43 N N
4 O4P P O P sing 1.61 N N
5 O1P P O P doub 1.48 N N
6 C1 O3P C O sing 1.43 N N
7 C1 C2 C C sing 1.53 N N
8 O3P P O P sing 1.61 N N
9 P O2P P O sing 1.61 N N
10 C2 C3 C C sing 1.53 N N
11 C2 O2 C O sing 1.45 N N
12 C3 O3 C O sing 1.45 N N
13 O2 C10 O C sing 1.34 N N
14 C31 C30 C C sing 1.51 N N
15 C31 C32 C C sing 1.53 N N
16 C33 C32 C C sing 1.53 N N
17 C33 C34 C C sing 1.53 N N
18 C30 O3 C O sing 1.34 N N
19 C30 O5 C O doub 1.21 N N
20 C10 O4 C O doub 1.21 N N
21 C10 C11 C C sing 1.51 N N
22 C34 C35 C C sing 1.53 N N
23 C11 C12 C C sing 1.53 N N
24 C35 C36 C C sing 1.53 N N
25 C36 C37 C C sing 1.53 N N
26 C37 C38 C C sing 1.51 N N
27 C38 C39 C C doub 1.31 Z N
28 C12 C13 C C sing 1.53 N N
29 C39 C40 C C sing 1.51 N N
30 C13 C14 C C sing 1.53 N N
31 C14 C15 C C sing 1.53 N N
32 C40 C41 C C sing 1.53 N N
33 C15 C16 C C sing 1.53 N N
34 C41 C42 C C sing 1.53 N N
35 C16 C17 C C sing 1.53 N N
36 C42 C43 C C sing 1.53 N N
37 C17 C18 C C sing 1.51 N N
38 C43 C44 C C sing 1.53 N N
39 C18 C19 C C doub 1.31 Z N
40 C46 C47 C C sing 1.53 N N
41 C46 C45 C C sing 1.53 N N
42 C44 C45 C C sing 1.53 N N
43 C19 C20 C C sing 1.51 N N
44 C20 C21 C C sing 1.53 N N
45 C21 C22 C C sing 1.53 N N
46 C22 C23 C C sing 1.53 N N
47 C23 C24 C C sing 1.53 N N
48 C24 C25 C C sing 1.53 N N
49 C26 C25 C C sing 1.53 N N
50 C26 C27 C C sing 1.53 N N
51 C27 H7 C H sing 1.09 N N
52 C27 H8 C H sing 1.09 N N
53 C27 H82 C H sing 1.09 N N
54 C26 H5 C H sing 1.09 N N
55 C26 H6 C H sing 1.09 N N
56 C25 H12 C H sing 1.09 N N
57 C25 H4 C H sing 1.09 N N
58 C24 H10 C H sing 1.09 N N
59 C24 H11 C H sing 1.09 N N
60 C23 H83 C H sing 1.09 N N
61 C23 H9 C H sing 1.09 N N
62 C22 H2 C H sing 1.09 N N
63 C22 H3 C H sing 1.09 N N
64 C21 H14 C H sing 1.09 N N
65 C21 H1 C H sing 1.09 N N
66 C20 H16 C H sing 1.09 N N
67 C20 H13 C H sing 1.09 N N
68 C19 H18 C H sing 1.08 N N
69 C18 H20 C H sing 1.08 N N
70 C17 H22 C H sing 1.09 N N
71 C17 H19 C H sing 1.09 N N
72 C16 H21 C H sing 1.09 N N
73 C16 H28 C H sing 1.09 N N
74 C15 H23 C H sing 1.09 N N
75 C15 H24 C H sing 1.09 N N
76 C14 H25 C H sing 1.09 N N
77 C14 H26 C H sing 1.09 N N
78 C13 H17 C H sing 1.09 N N
79 C13 H27 C H sing 1.09 N N
80 C12 H15 C H sing 1.09 N N
81 C12 H29 C H sing 1.09 N N
82 C11 H30 C H sing 1.09 N N
83 C11 H31 C H sing 1.09 N N
84 C2 H32 C H sing 1.09 N N
85 C1 H33 C H sing 1.09 N N
86 C1 H34 C H sing 1.09 N N
87 O2P H35 O H sing 0.97 N N
88 C4 H36 C H sing 1.09 N N
89 C4 H37 C H sing 1.09 N N
90 C5 H38 C H sing 1.09 N N
91 C5 H39 C H sing 1.09 N N
92 N H40 N H sing 1.01 N N
93 N H41 N H sing 1.01 N N
94 C3 H43 C H sing 1.09 N N
95 C3 H44 C H sing 1.09 N N
96 C31 H45 C H sing 1.09 N N
97 C31 H46 C H sing 1.09 N N
98 C32 H47 C H sing 1.09 N N
99 C32 H48 C H sing 1.09 N N
100 C33 H49 C H sing 1.09 N N
101 C33 H50 C H sing 1.09 N N
102 C34 H51 C H sing 1.09 N N
103 C34 H52 C H sing 1.09 N N
104 C35 H53 C H sing 1.09 N N
105 C35 H54 C H sing 1.09 N N
106 C36 H55 C H sing 1.09 N N
107 C36 H56 C H sing 1.09 N N
108 C37 H57 C H sing 1.09 N N
109 C37 H58 C H sing 1.09 N N
110 C38 H59 C H sing 1.08 N N
111 C39 H60 C H sing 1.08 N N
112 C40 H81 C H sing 1.09 N N
113 C40 H61 C H sing 1.09 N N
114 C41 H80 C H sing 1.09 N N
115 C41 H62 C H sing 1.09 N N
116 C42 H63 C H sing 1.09 N N
117 C42 H64 C H sing 1.09 N N
118 C43 H65 C H sing 1.09 N N
119 C43 H66 C H sing 1.09 N N
120 C44 H67 C H sing 1.09 N N
121 C44 H68 C H sing 1.09 N N
122 C45 H69 C H sing 1.09 N N
123 C45 H70 C H sing 1.09 N N
124 C46 H71 C H sing 1.09 N N
125 C46 H72 C H sing 1.09 N N
126 C47 H73 C H sing 1.09 N N
127 C47 H74 C H sing 1.09 N N
128 C47 H75 C H sing 1.09 N N