Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MTX    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.32 N Y
2 N1 C8A N C sing 1.34 N Y
3 C2 NA2 C N sing 1.38 N N
4 C2 N3 C N sing 1.33 N Y
5 NA2 HN21 N H sing 0.97 N N
6 NA2 HN22 N H sing 0.97 N N
7 N3 C4 N C doub 1.33 N Y
8 C4 NA4 C N sing 1.38 N N
9 C4 C4A C C sing 1.46 N Y
10 NA4 HN41 N H sing 0.97 N N
11 NA4 HN42 N H sing 0.97 N N
12 C4A N5 C N sing 1.33 N Y
13 C4A C8A C C doub 1.42 N Y
14 N5 C6 N C doub 1.32 N Y
15 C6 C7 C C sing 1.39 N Y
16 C6 C9 C C sing 1.51 N N
17 C7 N8 C N doub 1.32 N Y
18 C7 H7 C H sing 1.08 N N
19 N8 C8A N C sing 1.34 N Y
20 C9 N10 C N sing 1.46 N N
21 C9 H91 C H sing 1.09 N N
22 C9 H92 C H sing 1.09 N N
23 N10 CM N C sing 1.47 N N
24 N10 C14 N C sing 1.39 N N
25 CM HM1 C H sing 1.09 N N
26 CM HM2 C H sing 1.09 N N
27 CM HM3 C H sing 1.09 N N
28 C11 C12 C C doub 1.4 N Y
29 C11 C16 C C sing 1.4 N Y
30 C11 C C C sing 1.48 N N
31 C12 C13 C C sing 1.37 N Y
32 C12 H12 C H sing 1.08 N N
33 C13 C14 C C doub 1.39 N Y
34 C13 H13 C H sing 1.08 N N
35 C14 C15 C C sing 1.39 N Y
36 C15 C16 C C doub 1.38 N Y
37 C15 H15 C H sing 1.08 N N
38 C16 H16 C H sing 1.08 N N
39 C O C O doub 1.22 N N
40 C N C N sing 1.35 N N
41 N CA N C sing 1.46 N N
42 N HN N H sing 0.97 N N
43 CA CT C C sing 1.51 N N
44 CA CB C C sing 1.53 N N
45 CA HA C H sing 1.09 N N
46 CT O1 C O doub 1.21 N N
47 CT O2 C O sing 1.34 N N
48 O2 HO2 O H sing 0.97 N N
49 CB CG C C sing 1.53 N N
50 CB HB1 C H sing 1.09 N N
51 CB HB2 C H sing 1.09 N N
52 CG CD C C sing 1.51 N N
53 CG HG1 C H sing 1.09 N N
54 CG HG2 C H sing 1.09 N N
55 CD OE1 C O doub 1.21 N N
56 CD OE2 C O sing 1.34 N N
57 OE2 HOE2 O H sing 0.97 N N