Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MK1    

Bonds between two atoms of the molecule

Total Number of Bonds: 96


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C1 N C sing 1.47 N N
2 N1 C9 N C sing 1.47 N N
3 N1 C31 N C sing 1.47 N N
4 C1 C2 C C sing 1.53 N N
5 C1 H11A C H sing 1.09 N N
6 C1 H12 C H sing 1.09 N N
7 C2 C3 C C sing 1.51 N N
8 C2 N3 C N sing 1.47 N N
9 C2 H2 C H sing 1.09 N N
10 C3 O1 C O doub 1.21 N N
11 C3 N2 C N sing 1.35 N N
12 N2 C4 N C sing 1.46 N N
13 N2 HN2 N H sing 0.97 N N
14 C4 C5 C C sing 1.53 N N
15 C4 C6 C C sing 1.53 N N
16 C4 C7 C C sing 1.53 N N
17 C5 H51 C H sing 1.09 N N
18 C5 H52 C H sing 1.09 N N
19 C5 H53 C H sing 1.09 N N
20 C6 H61 C H sing 1.09 N N
21 C6 H62 C H sing 1.09 N N
22 C6 H63 C H sing 1.09 N N
23 C7 H71 C H sing 1.09 N N
24 C7 H72 C H sing 1.09 N N
25 C7 H73 C H sing 1.09 N N
26 N3 C8 N C sing 1.47 N N
27 N3 C10 N C sing 1.47 N N
28 C8 C9 C C sing 1.53 N N
29 C8 H81 C H sing 1.09 N N
30 C8 H82 C H sing 1.09 N N
31 C9 H91 C H sing 1.09 N N
32 C9 H92 C H sing 1.09 N N
33 C10 C11 C C sing 1.53 N N
34 C10 H101 C H sing 1.09 N N
35 C10 H102 C H sing 1.09 N N
36 C11 O2 C O sing 1.43 N N
37 C11 C12 C C sing 1.53 N N
38 C11 H11 C H sing 1.09 N N
39 O2 HO2 O H sing 0.97 N N
40 C12 C13 C C sing 1.53 N N
41 C12 H121 C H sing 1.09 N N
42 C12 H122 C H sing 1.09 N N
43 C13 C14 C C sing 1.53 N N
44 C13 C21 C C sing 1.51 N N
45 C13 H13 C H sing 1.09 N N
46 C14 C15 C C sing 1.51 N N
47 C14 H141 C H sing 1.09 N N
48 C14 H142 C H sing 1.09 N N
49 C15 C16 C C doub 1.38 N Y
50 C15 C20 C C sing 1.38 N Y
51 C16 C17 C C sing 1.38 N Y
52 C16 H16 C H sing 1.08 N N
53 C17 C18 C C doub 1.38 N Y
54 C17 H17 C H sing 1.08 N N
55 C18 C19 C C sing 1.38 N Y
56 C18 H18 C H sing 1.08 N N
57 C19 C20 C C doub 1.38 N Y
58 C19 H19 C H sing 1.08 N N
59 C20 H20 C H sing 1.08 N N
60 C21 O3 C O doub 1.21 N N
61 C21 N4 C N sing 1.35 N N
62 N4 C22 N C sing 1.46 N N
63 N4 HN4 N H sing 0.97 N N
64 C22 C23 C C sing 1.54 N N
65 C22 C30 C C sing 1.51 N N
66 C22 H22 C H sing 1.09 N N
67 C23 O4 C O sing 1.43 N N
68 C23 C24 C C sing 1.54 N N
69 C23 H23 C H sing 1.09 N N
70 O4 HO4 O H sing 0.97 N N
71 C24 C25 C C sing 1.51 N N
72 C24 H241 C H sing 1.09 N N
73 C24 H242 C H sing 1.09 N N
74 C25 C26 C C doub 1.38 N Y
75 C25 C30 C C sing 1.38 N Y
76 C26 C27 C C sing 1.38 N Y
77 C26 H26 C H sing 1.08 N N
78 C27 C28 C C doub 1.38 N Y
79 C27 H27 C H sing 1.08 N N
80 C28 C29 C C sing 1.38 N Y
81 C28 H28 C H sing 1.08 N N
82 C29 C30 C C doub 1.38 N Y
83 C29 H29 C H sing 1.08 N N
84 C31 C32 C C sing 1.51 N N
85 C31 H311 C H sing 1.09 N N
86 C31 H312 C H sing 1.09 N N
87 C32 C33 C C sing 1.38 N Y
88 C32 C36 C C doub 1.39 N Y
89 C33 N5 C N doub 1.32 N Y
90 C33 H33 C H sing 1.08 N N
91 N5 C34 N C sing 1.32 N Y
92 C34 C35 C C doub 1.38 N Y
93 C34 H34 C H sing 1.08 N N
94 C35 C36 C C sing 1.39 N Y
95 C35 H35 C H sing 1.08 N N
96 C36 H36 C H sing 1.08 N N