Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
M1I
Bonds between two atoms of the molecule
Total Number of Bonds: 62
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
C16
N13
C
N
sing
1.47
N
N
2
C12
N13
C
N
sing
1.47
N
N
3
C12
C11
C
C
sing
1.53
N
N
4
C14
N13
C
N
sing
1.47
N
N
5
C14
C15
C
C
sing
1.53
N
N
6
C1
C3
C
C
sing
1.53
N
N
7
C1
C2
C
C
sing
1.53
N
N
8
N10
C11
N
C
sing
1.47
N
N
9
N10
C15
N
C
sing
1.47
N
N
10
N10
C2
N
C
sing
1.47
N
N
11
C3
C2
C
C
sing
1.53
N
N
12
C2
C7
C
C
sing
1.51
N
N
13
C7
C8
C
C
doub
1.38
N
Y
14
C7
C6
C
C
sing
1.39
N
Y
15
O26
C6
O
C
sing
1.36
N
N
16
O26
C28
O
C
sing
1.43
N
N
17
C8
C9
C
C
sing
1.38
N
Y
18
C6
C5
C
C
doub
1.39
N
Y
19
C9
C4
C
C
doub
1.39
N
Y
20
C5
C4
C
C
sing
1.39
N
Y
21
C4
C17
C
C
sing
1.48
N
N
22
C17
C22
C
C
doub
1.36
N
N
23
C17
C18
C
C
sing
1.41
N
N
24
C27
C18
C
C
sing
1.51
N
N
25
C22
N21
C
N
sing
1.36
N
N
26
C18
C19
C
C
doub
1.36
N
N
27
N21
C24
N
C
sing
1.47
N
N
28
N21
C20
N
C
sing
1.35
N
N
29
C19
C20
C
C
sing
1.41
N
N
30
C19
C25
C
C
sing
1.51
N
N
31
C20
O23
C
O
doub
1.22
N
N
32
C5
H33
C
H
sing
1.08
N
N
33
C8
H34
C
H
sing
1.08
N
N
34
C15
H44
C
H
sing
1.09
N
N
35
C15
H43
C
H
sing
1.09
N
N
36
C22
H48
C
H
sing
1.08
N
N
37
C24
H49
C
H
sing
1.09
N
N
38
C24
H50
C
H
sing
1.09
N
N
39
C24
H51
C
H
sing
1.09
N
N
40
C28
H58
C
H
sing
1.09
N
N
41
C28
H59
C
H
sing
1.09
N
N
42
C28
H60
C
H
sing
1.09
N
N
43
C1
H30
C
H
sing
1.09
N
N
44
C1
H29
C
H
sing
1.09
N
N
45
C11
H37
C
H
sing
1.09
N
N
46
C11
H36
C
H
sing
1.09
N
N
47
C12
H39
C
H
sing
1.09
N
N
48
C12
H38
C
H
sing
1.09
N
N
49
C14
H41
C
H
sing
1.09
N
N
50
C14
H42
C
H
sing
1.09
N
N
51
C16
H47
C
H
sing
1.09
N
N
52
C16
H45
C
H
sing
1.09
N
N
53
C16
H46
C
H
sing
1.09
N
N
54
C25
H53
C
H
sing
1.09
N
N
55
C25
H54
C
H
sing
1.09
N
N
56
C25
H52
C
H
sing
1.09
N
N
57
C27
H57
C
H
sing
1.09
N
N
58
C27
H55
C
H
sing
1.09
N
N
59
C27
H56
C
H
sing
1.09
N
N
60
C3
H31
C
H
sing
1.09
N
N
61
C3
H32
C
H
sing
1.09
N
N
62
C9
H35
C
H
sing
1.08
N
N