Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : LIX    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C1 N C doub 1.35 N Y
2 N1 C2 N C sing 1.35 N Y
3 N3 C1 N C sing 1.42 N N
4 N3 C20 N C sing 1.43 N N
5 N3 HN3 N H sing 1.0 N N
6 C4 C12 C C sing 1.45 N Y
7 C4 C3 C C doub 1.38 N Y
8 C4 C1 C C sing 1.38 N Y
9 C5 C6 C C sing 1.52 N N
10 C5 C3 C C sing 1.49 N N
11 C5 H51 C H sing 1.1 N N
12 C5 H52 C H sing 1.1 N N
13 C6 H61 C H sing 1.1 N N
14 C6 H62 C H sing 1.09 N N
15 C6 H63 C H sing 1.1 N N
16 C7 C8 C C doub 1.39 N Y
17 C7 C12 C C sing 1.39 N Y
18 C7 H7 C H sing 1.09 N N
19 C8 C9 C C sing 1.4 N Y
20 C8 H8 C H sing 1.09 N N
21 C10 N5 C N sing 1.42 N N
22 C10 C9 C C doub 1.4 N Y
23 C10 C11 C C sing 1.4 N Y
24 C13 C14 C C sing 1.54 N N
25 C13 H131 C H sing 1.09 N N
26 C13 H132 C H sing 1.09 N N
27 C13 H133 C H sing 1.09 N N
28 C15 O3 C O doub 1.23 N N
29 C15 C14 C C sing 1.54 N N
30 C15 N5 C N sing 1.39 N N
31 C17 C18 C C sing 1.52 N N
32 C17 C16 C C sing 1.52 N N
33 C17 H171 C H sing 1.1 N N
34 C17 H172 C H sing 1.1 N N
35 C20 C21 C C sing 1.52 N N
36 C20 H201 C H sing 1.09 N N
37 C20 H202 C H sing 1.09 N N
38 C21 N6 C N sing 1.44 N N
39 C21 H211 C H sing 1.09 N N
40 C21 H212 C H sing 1.09 N N
41 C22 C14 C C sing 1.54 N N
42 C22 H221 C H sing 1.09 N N
43 C22 H222 C H sing 1.09 N N
44 C22 H223 C H sing 1.09 N N
45 C24 C25 C C doub 1.4 N Y
46 C24 C23 C C sing 1.4 N Y
47 C24 H24 C H sing 1.09 N N
48 C26 C32 C C sing 1.41 N Y
49 C26 C27 C C doub 1.4 N Y
50 C26 C25 C C sing 1.42 N Y
51 C28 C27 C C sing 1.4 N Y
52 C28 C23 C C doub 1.39 N Y
53 C28 H28 C H sing 1.09 N N
54 O5 S1 O S doub 1.45 N N
55 S1 O4 S O doub 1.45 N N
56 S1 C30 S C sing 1.77 N N
57 S1 N6 S N sing 1.72 N N
58 C30 C31 C C sing 1.38 N Y
59 C30 C29 C C doub 1.38 N Y
60 C29 C25 C C sing 1.4 N Y
61 C29 H29 C H sing 1.09 N N
62 C31 C32 C C doub 1.39 N Y
63 C31 H31 C H sing 1.09 N N
64 C32 H32 C H sing 1.09 N N
65 C27 H27 C H sing 1.09 N N
66 C23 H23 C H sing 1.09 N N
67 N6 HN6 N H sing 1.04 N N
68 C3 N2 C N sing 1.35 N Y
69 N2 C2 N C doub 1.35 N Y
70 C2 N4 C N sing 1.41 N N
71 N4 HN41 N H sing 1.0 N N
72 N4 HN42 N H sing 1.0 N N
73 C12 C11 C C doub 1.4 N Y
74 C11 H11 C H sing 1.09 N N
75 N5 C16 N C sing 1.46 N N
76 C16 H161 C H sing 1.09 N N
77 C16 H162 C H sing 1.1 N N
78 C18 O1 C O sing 1.42 N N
79 C18 H181 C H sing 1.09 N N
80 C18 H182 C H sing 1.1 N N
81 O1 C19 O C sing 1.42 N N
82 C19 H191 C H sing 1.09 N N
83 C19 H192 C H sing 1.09 N N
84 C19 H193 C H sing 1.09 N N
85 C14 O2 C O sing 1.42 N N
86 O2 C9 O C sing 1.36 N N