Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : LHH    

Bonds between two atoms of the molecule

Total Number of Bonds: 44


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C2 O C doub 1.22 N N
2 C1 O2' C O sing 1.43 N N
3 N3 C2 N C sing 1.33 N N
4 N3 C4 N C doub 1.33 N N
5 C2 N1 C N sing 1.35 N N
6 N4 C4 N C sing 1.38 N N
7 N4 C7 N C sing 1.35 N N
8 C4 C5 C C sing 1.41 N N
9 O2' C2' O C sing 1.43 N N
10 N1 C1' N C sing 1.46 N N
11 N1 C6 N C sing 1.36 N N
12 C1' C2' C C sing 1.55 N N
13 C1' O4' C O sing 1.44 N N
14 O7 C7 O C doub 1.21 N N
15 C2' C3' C C sing 1.55 N N
16 C7 CM7 C C sing 1.51 N N
17 C5 C6 C C doub 1.36 N N
18 O4' C4' O C sing 1.44 N N
19 C3' C4' C C sing 1.54 N N
20 C3' O3' C O sing 1.43 N N
21 C4' C5' C C sing 1.53 N N
22 C5' O5' C O sing 1.43 N N
23 O5' P O P sing 1.61 N N
24 P OP1 P O sing 1.61 N N
25 P OP2 P O doub 1.48 N N
26 C5 H1 C H sing 1.08 N N
27 C6 H2 C H sing 1.08 N N
28 N4 H3 N H sing 0.97 N N
29 C1 H4 C H sing 1.09 N N
30 C1 H5 C H sing 1.09 N N
31 C1 H6 C H sing 1.09 N N
32 C1' H7 C H sing 1.09 N N
33 C2' H8 C H sing 1.09 N N
34 C3' H9 C H sing 1.09 N N
35 C4' H10 C H sing 1.09 N N
36 C5' H11 C H sing 1.09 N N
37 C5' H12 C H sing 1.09 N N
38 CM7 H13 C H sing 1.09 N N
39 CM7 H14 C H sing 1.09 N N
40 CM7 H15 C H sing 1.09 N N
41 O3' H16 O H sing 0.97 N N
42 OP1 H17 O H sing 0.97 N N
43 P OP3 P O sing 1.61 N N
44 OP3 H18 O H sing 0.97 N N