Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : JYP    

Bonds between two atoms of the molecule

Total Number of Bonds: 71


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O17 P3 O P doub 1.48 N N
2 O18 P3 O P sing 1.61 N N
3 P3 O15 P O sing 1.61 N N
4 P3 O16 P O sing 1.61 N N
5 O15 C7 O C sing 1.43 N N
6 C6 O1 C O sing 1.44 N N
7 C6 C7 C C sing 1.54 N N
8 C6 N5 C N sing 1.47 N N
9 O1 C9 O C sing 1.44 N N
10 C7 C8 C C sing 1.54 N N
11 C9 C8 C C sing 1.55 N N
12 C9 C10 C C sing 1.53 N N
13 C8 O3 C O sing 1.43 N N
14 N1 C1 N C doub 1.32 N Y
15 N1 C2 N C sing 1.33 N Y
16 C1 N2 C N sing 1.32 N Y
17 N5 C2 N C sing 1.37 N Y
18 N5 C5 N C sing 1.36 N Y
19 C2 C3 C C doub 1.41 N Y
20 C5 N4 C N doub 1.3 N Y
21 N2 C4 N C doub 1.33 N Y
22 C3 N4 C N sing 1.35 N Y
23 C3 C4 C C sing 1.4 N Y
24 O14 C12 O C sing 1.43 N N
25 C4 N3 C N sing 1.38 N N
26 O2 C10 O C sing 1.43 N N
27 C11 O3 C O sing 1.43 N N
28 C11 C12 C C sing 1.53 N N
29 C11 O4 C O sing 1.43 N N
30 C12 C13 C C sing 1.53 N N
31 O4 C15 O C sing 1.43 N N
32 C15 C16 C C sing 1.53 N N
33 C15 C14 C C sing 1.53 N N
34 O5 C16 O C sing 1.43 N N
35 O6 C14 O C sing 1.43 N N
36 O6 P1 O P sing 1.61 N N
37 C13 C14 C C sing 1.53 N N
38 C13 O10 C O sing 1.43 N N
39 O10 P2 O P sing 1.61 N N
40 O8 P1 O P doub 1.48 N N
41 P1 O9 P O sing 1.61 N N
42 P1 O7 P O sing 1.61 N N
43 P2 O13 P O doub 1.48 N N
44 P2 O12 P O sing 1.61 N N
45 P2 O11 P O sing 1.61 N N
46 C1 H1 C H sing 1.08 N N
47 N3 H2 N H sing 0.97 N N
48 N3 H3 N H sing 0.97 N N
49 C5 H4 C H sing 1.08 N N
50 C6 H5 C H sing 1.09 N N
51 C7 H6 C H sing 1.09 N N
52 C8 H7 C H sing 1.09 N N
53 C9 H8 C H sing 1.09 N N
54 C10 H9 C H sing 1.09 N N
55 C10 H10 C H sing 1.09 N N
56 O2 H11 O H sing 0.97 N N
57 C11 H12 C H sing 1.09 N N
58 C12 H13 C H sing 1.09 N N
59 C13 H14 C H sing 1.09 N N
60 C14 H15 C H sing 1.09 N N
61 C15 H16 C H sing 1.09 N N
62 C16 H17 C H sing 1.09 N N
63 C16 H18 C H sing 1.09 N N
64 O5 H19 O H sing 0.97 N N
65 O7 H20 O H sing 0.97 N N
66 O9 H21 O H sing 0.97 N N
67 O11 H22 O H sing 0.97 N N
68 O12 H23 O H sing 0.97 N N
69 O14 H24 O H sing 0.97 N N
70 O16 H25 O H sing 0.97 N N
71 O18 H26 O H sing 0.97 N N