Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : JH0    

Bonds between two atoms of the molecule

Total Number of Bonds: 163


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O4 C O C doub 1.23 N N
2 C C12 C C sing 1.52 N N
3 C N C N sing 1.37 N N
4 C12 C13 C C sing 1.53 N N
5 C12 H121 C H sing 1.1 N N
6 C12 H122 C H sing 1.1 N N
7 C13 C14 C C sing 1.53 N N
8 C13 H131 C H sing 1.1 N N
9 C13 H132 C H sing 1.1 N N
10 C14 C15 C C sing 1.53 N N
11 C14 H141 C H sing 1.1 N N
12 C14 H142 C H sing 1.1 N N
13 C15 C16 C C sing 1.53 N N
14 C15 H151 C H sing 1.1 N N
15 C15 H152 C H sing 1.09 N N
16 C16 C17 C C sing 1.53 N N
17 C16 H161 C H sing 1.1 N N
18 C16 H162 C H sing 1.1 N N
19 C17 C18 C C sing 1.53 N N
20 C17 H171 C H sing 1.1 N N
21 C17 H172 C H sing 1.1 N N
22 C18 C19 C C sing 1.53 N N
23 C18 H181 C H sing 1.1 N N
24 C18 H182 C H sing 1.1 N N
25 C19 C20 C C sing 1.53 N N
26 C19 H191 C H sing 1.1 N N
27 C19 H192 C H sing 1.1 N N
28 C20 C21 C C sing 1.53 N N
29 C20 H201 C H sing 1.1 N N
30 C20 H202 C H sing 1.09 N N
31 C21 C22 C C sing 1.53 N N
32 C21 H211 C H sing 1.1 N N
33 C21 H212 C H sing 1.1 N N
34 C22 C23 C C sing 1.53 N N
35 C22 H221 C H sing 1.1 N N
36 C22 H222 C H sing 1.1 N N
37 C23 C24 C C sing 1.53 N N
38 C23 H231 C H sing 1.1 N N
39 C23 H232 C H sing 1.1 N N
40 C24 C25 C C sing 1.53 N N
41 C24 H241 C H sing 1.1 N N
42 C24 H242 C H sing 1.1 N N
43 C25 C26 C C sing 1.52 N N
44 C25 H251 C H sing 1.1 N N
45 C25 H252 C H sing 1.1 N N
46 C26 H261 C H sing 1.09 N N
47 C26 H262 C H sing 1.09 N N
48 C26 H263 C H sing 1.09 N N
49 N ON1 N O sing 1.4 N N
50 N C1 N C sing 1.45 N N
51 ON1 HN1 O H sing 0.97 N N
52 C1 C2 C C sing 1.53 N N
53 C1 H11 C H sing 1.09 N N
54 C1 H12 C H sing 1.09 N N
55 C2 C3 C C sing 1.53 N N
56 C2 H21 C H sing 1.1 N N
57 C2 H22 C H sing 1.1 N N
58 C3 C4 C C sing 1.53 N N
59 C3 H31 C H sing 1.1 N N
60 C3 H32 C H sing 1.1 N N
61 C4 C5 C C sing 1.53 N N
62 C4 H41A C H sing 1.1 N N
63 C4 H42A C H sing 1.1 N N
64 C5 N2 C N sing 1.44 N N
65 C5 C6 C C sing 1.52 N N
66 C5 H5 C H sing 1.1 N N
67 N2 C11 N C sing 1.38 N N
68 N2 HN2 N H sing 1.02 N N
69 C11 O3 C O doub 1.23 N N
70 C11 C39 C C sing 1.49 N N
71 C39 N4 C N sing 1.47 N N
72 C39 C37 C C sing 1.51 N N
73 C39 H39 C H sing 1.09 N N
74 N4 C38 N C doub 1.3 N N
75 C38 O6 C O sing 1.35 N N
76 C38 C45 C C sing 1.44 N N
77 O6 C37 O C sing 1.42 N N
78 C37 H371 C H sing 1.1 N N
79 C37 H372 C H sing 1.09 N N
80 C45 C44 C C doub 1.4 N Y
81 C45 C40 C C sing 1.4 N Y
82 C44 C43 C C sing 1.4 N Y
83 C44 H44 C H sing 1.09 N N
84 C43 C42 C C doub 1.39 N Y
85 C43 H43 C H sing 1.09 N N
86 C42 C41 C C sing 1.39 N Y
87 C42 H42 C H sing 1.09 N N
88 C41 C40 C C doub 1.4 N Y
89 C41 H41 C H sing 1.09 N N
90 C40 O7 C O sing 1.36 N N
91 O7 HO7 O H sing 0.97 N N
92 C6 O C O doub 1.23 N N
93 C6 O1 C O sing 1.36 N N
94 O1 C7 O C sing 1.43 N N
95 C7 C9 C C sing 1.52 N N
96 C7 C8 C C sing 1.53 N N
97 C7 H7 C H sing 1.1 N N
98 C9 H91 C H sing 1.09 N N
99 C9 H92 C H sing 1.1 N N
100 C9 H93 C H sing 1.1 N N
101 C8 C10 C C sing 1.52 N N
102 C8 H81 C H sing 1.1 N N
103 C8 H82 C H sing 1.1 N N
104 C10 O2 C O doub 1.23 N N
105 C10 N1 C N sing 1.39 N N
106 N1 C35 N C sing 1.44 N N
107 N1 H1 N H sing 1.02 N N
108 C35 C36 C C sing 1.52 N N
109 C35 C34 C C sing 1.53 N N
110 C35 H35 C H sing 1.1 N N
111 C36 O5 C O doub 1.24 N N
112 C36 N3 C N sing 1.37 N N
113 C34 C33 C C sing 1.53 N N
114 C34 H341 C H sing 1.1 N N
115 C34 H342 C H sing 1.1 N N
116 C33 C32 C C sing 1.52 N N
117 C33 H331 C H sing 1.1 N N
118 C33 H332 C H sing 1.1 N N
119 C32 C31 C C sing 1.52 N N
120 C32 H321 C H sing 1.1 N N
121 C32 H322 C H sing 1.1 N N
122 C31 N3 C N sing 1.45 N N
123 C31 H311 C H sing 1.1 N N
124 C31 H312 C H sing 1.09 N N
125 N3 ON2 N O sing 1.41 N N
126 ON2 SI70 O SI sing 1.67 N N
127 SI70 C27 SI C sing 1.86 N N
128 SI70 C46 SI C sing 1.88 N N
129 SI70 C47 SI C sing 1.88 N N
130 C27 C28 C C sing 1.55 N N
131 C27 C29 C C sing 1.54 N N
132 C27 C30 C C sing 1.55 N N
133 C28 H281 C H sing 1.1 N N
134 C28 H282 C H sing 1.1 N N
135 C28 H283 C H sing 1.1 N N
136 C29 H291 C H sing 1.1 N N
137 C29 H292 C H sing 1.1 N N
138 C29 H293 C H sing 1.1 N N
139 C30 H301 C H sing 1.1 N N
140 C30 H302 C H sing 1.1 N N
141 C30 H303 C H sing 1.1 N N
142 C46 C51 C C doub 1.39 N Y
143 C46 C52 C C sing 1.39 N Y
144 C47 C53 C C doub 1.38 N Y
145 C47 C57 C C sing 1.38 N Y
146 C48 C49 C C sing 1.39 N Y
147 C48 C52 C C doub 1.39 N Y
148 C48 H48 C H sing 1.09 N N
149 C49 C50 C C doub 1.39 N Y
150 C49 H49 C H sing 1.09 N N
151 C50 C51 C C sing 1.4 N Y
152 C50 H50 C H sing 1.09 N N
153 C51 H51 C H sing 1.09 N N
154 C52 H52 C H sing 1.09 N N
155 C53 C54 C C sing 1.4 N Y
156 C53 H53 C H sing 1.09 N N
157 C54 C55 C C doub 1.39 N Y
158 C54 H54 C H sing 1.09 N N
159 C55 C56 C C sing 1.39 N Y
160 C55 H55 C H sing 1.09 N N
161 C56 C57 C C doub 1.4 N Y
162 C56 H56 C H sing 1.09 N N
163 C57 H57 C H sing 1.09 N N