Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : J5Q    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C01 C02 C C sing 1.51 N N
2 C02 C05 C C doub 1.38 N Y
3 C02 C03 C C sing 1.38 N Y
4 C05 C06 C C sing 1.38 N Y
5 C03 C04 C C doub 1.38 N Y
6 C06 C07 C C doub 1.39 N Y
7 C04 C07 C C sing 1.39 N Y
8 C07 S08 C S sing 1.76 N N
9 O30 C29 O C sing 1.43 N N
10 N28 N27 N N doub 1.29 N Y
11 N28 N17 N N sing 1.29 N Y
12 N27 C19 N C sing 1.34 N Y
13 C09 S08 C S sing 1.81 N N
14 C09 C29 C C sing 1.53 N N
15 C09 O10 C O sing 1.43 N N
16 C16 C29 C C sing 1.53 N N
17 C16 N17 C N sing 1.47 N N
18 C16 C14 C C sing 1.53 N N
19 N17 C18 N C sing 1.35 N Y
20 C11 O10 C O sing 1.43 N N
21 C11 C14 C C sing 1.53 N N
22 C11 C12 C C sing 1.53 N N
23 C19 C18 C C doub 1.37 N Y
24 C19 C20 C C sing 1.48 N N
25 C14 O15 C O sing 1.43 N N
26 C26 C20 C C doub 1.39 N Y
27 C26 C25 C C sing 1.38 N Y
28 O13 C12 O C sing 1.43 N N
29 C20 C21 C C sing 1.39 N Y
30 C25 C24 C C doub 1.38 N Y
31 C21 C22 C C doub 1.38 N Y
32 C24 C22 C C sing 1.39 N Y
33 C22 F23 C F sing 1.35 N N
34 C21 H211 C H sing 1.08 N N
35 C24 H241 C H sing 1.08 N N
36 C26 H261 C H sing 1.08 N N
37 C01 H011 C H sing 1.09 N N
38 C01 H013 C H sing 1.09 N N
39 C01 H012 C H sing 1.09 N N
40 C03 H031 C H sing 1.08 N N
41 C04 H041 C H sing 1.08 N N
42 C05 H051 C H sing 1.08 N N
43 C06 H061 C H sing 1.08 N N
44 C09 H091 C H sing 1.09 N N
45 C11 H111 C H sing 1.09 N N
46 C12 H121 C H sing 1.09 N N
47 C12 H122 C H sing 1.09 N N
48 C14 H141 C H sing 1.09 N N
49 C16 H161 C H sing 1.09 N N
50 C18 H181 C H sing 1.08 N N
51 C25 H251 C H sing 1.08 N N
52 C29 H291 C H sing 1.09 N N
53 O13 H131 O H sing 0.97 N N
54 O15 H151 O H sing 0.97 N N
55 O30 H301 O H sing 0.97 N N