Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : IP5    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O16 C6 O C sing 1.43 N N
2 O16 HO16 O H sing 0.97 N N
3 C6 C5 C C sing 1.54 N N
4 C6 C1 C C sing 1.53 N N
5 C6 H6 C H sing 1.1 N N
6 C1 C2 C C sing 1.54 N N
7 C1 O11 C O sing 1.43 N N
8 C1 H1 C H sing 1.1 N N
9 O11 P1 O P sing 1.61 N N
10 P1 O21 P O doub 1.5 N N
11 P1 O41 P O sing 1.62 N N
12 P1 O31 P O sing 1.62 N N
13 O41 HO41 O H sing 0.98 N N
14 O31 HO31 O H sing 0.98 N N
15 C5 O15 C O sing 1.43 N N
16 C5 C4 C C sing 1.54 N N
17 C5 H5 C H sing 1.1 N N
18 O15 P5 O P sing 1.61 N N
19 P5 O25 P O doub 1.5 N N
20 P5 O45 P O sing 1.62 N N
21 P5 O35 P O sing 1.62 N N
22 O45 HO45 O H sing 0.98 N N
23 O35 HO35 O H sing 0.98 N N
24 C4 O14 C O sing 1.43 N N
25 C4 C3 C C sing 1.54 N N
26 C4 H4 C H sing 1.1 N N
27 O14 P4 O P sing 1.61 N N
28 P4 O24 P O doub 1.5 N N
29 P4 O44 P O sing 1.62 N N
30 P4 O34 P O sing 1.62 N N
31 O44 HO44 O H sing 0.98 N N
32 O34 HO34 O H sing 0.98 N N
33 C3 O13 C O sing 1.43 N N
34 C3 C2 C C sing 1.53 N N
35 C3 H3 C H sing 1.1 N N
36 O13 P3 O P sing 1.61 N N
37 P3 O33 P O doub 1.5 N N
38 P3 O23 P O sing 1.62 N N
39 P3 O43 P O sing 1.62 N N
40 O43 HO43 O H sing 0.98 N N
41 O23 HO23 O H sing 0.98 N N
42 C2 O12 C O sing 1.43 N N
43 C2 H2 C H sing 1.1 N N
44 O12 P2 O P sing 1.61 N N
45 P2 O32 P O doub 1.5 N N
46 P2 O42 P O sing 1.62 N N
47 P2 O22 P O sing 1.62 N N
48 O22 HO22 O H sing 0.98 N N
49 O42 HO42 O H sing 0.98 N N