Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : II3    

Bonds between two atoms of the molecule

Total Number of Bonds: 97


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O01 C06 O C sing 1.43 N N
2 C04 C07 C C sing 1.5 N N
3 C04 C12 C C sing 1.51 N N
4 C04 C03 C C sing 1.53 N N
5 C07 C10 C C doub 1.3 N N
6 C07 C15 C C sing 1.51 N N
7 C10 C06 C C sing 1.5 N N
8 C12 C21 C C doub 1.34 E N
9 C25 C24 C C sing 1.51 N N
10 C05 C06 C C sing 1.53 N N
11 C05 C03 C C sing 1.53 N N
12 C03 C09 C C sing 1.53 N N
13 C03 C08 C C sing 1.53 N N
14 C21 C24 C C sing 1.42 N N
15 C24 C26 C C doub 1.36 E N
16 C26 C29 C C sing 1.41 N N
17 C29 C32 C C doub 1.37 E N
18 C35 C33 C C sing 1.51 N N
19 C32 C33 C C sing 1.4 N N
20 C33 C36 C C doub 1.38 E N
21 C36 C39 C C sing 1.4 N N
22 C39 C41 C C doub 1.38 E N
23 C41 C40 C C sing 1.4 N N
24 C40 C38 C C doub 1.38 E N
25 C38 C37 C C sing 1.4 N N
26 C38 C42 C C sing 1.51 N N
27 C37 C34 C C doub 1.38 E N
28 C34 C31 C C sing 1.4 N N
29 C19 C11 C C sing 1.53 N N
30 C31 C28 C C doub 1.37 E N
31 C13 C11 C C sing 1.53 N N
32 C13 C14 C C sing 1.53 N N
33 O02 C14 O C sing 1.43 N N
34 C11 C16 C C sing 1.5 N N
35 C11 C20 C C sing 1.53 N N
36 C14 C17 C C sing 1.53 N N
37 C28 C27 C C sing 1.43 N N
38 C28 C30 C C sing 1.51 N N
39 C27 C23 C C trip 1.17 N N
40 C23 C16 C C sing 1.43 N N
41 C16 C18 C C doub 1.32 N N
42 C18 C17 C C sing 1.5 N N
43 C18 C22 C C sing 1.51 N N
44 C04 H1 C H sing 1.09 N N
45 C05 H2 C H sing 1.09 N N
46 C05 H3 C H sing 1.09 N N
47 C06 H4 C H sing 1.09 N N
48 C08 H6 C H sing 1.09 N N
49 C08 H7 C H sing 1.09 N N
50 C08 H8 C H sing 1.09 N N
51 C09 H9 C H sing 1.09 N N
52 C09 H10 C H sing 1.09 N N
53 C09 H11 C H sing 1.09 N N
54 C10 H12 C H sing 1.08 N N
55 C12 H14 C H sing 1.08 N N
56 C13 H15 C H sing 1.09 N N
57 C13 H16 C H sing 1.09 N N
58 C14 H17 C H sing 1.09 N N
59 C15 H18 C H sing 1.09 N N
60 C15 H19 C H sing 1.09 N N
61 C15 H20 C H sing 1.09 N N
62 C17 H21 C H sing 1.09 N N
63 C17 H22 C H sing 1.09 N N
64 C19 H23 C H sing 1.09 N N
65 C19 H24 C H sing 1.09 N N
66 C19 H25 C H sing 1.09 N N
67 C20 H26 C H sing 1.09 N N
68 C20 H27 C H sing 1.09 N N
69 C20 H28 C H sing 1.09 N N
70 C21 H29 C H sing 1.08 N N
71 C22 H30 C H sing 1.09 N N
72 C22 H31 C H sing 1.09 N N
73 C22 H32 C H sing 1.09 N N
74 C25 H33 C H sing 1.09 N N
75 C25 H34 C H sing 1.09 N N
76 C25 H35 C H sing 1.09 N N
77 C26 H36 C H sing 1.08 N N
78 C29 H37 C H sing 1.08 N N
79 C30 H38 C H sing 1.09 N N
80 C30 H39 C H sing 1.09 N N
81 C30 H40 C H sing 1.09 N N
82 C31 H41 C H sing 1.08 N N
83 C32 H42 C H sing 1.08 N N
84 C34 H43 C H sing 1.08 N N
85 C35 H44 C H sing 1.09 N N
86 C35 H45 C H sing 1.09 N N
87 C35 H46 C H sing 1.09 N N
88 C36 H47 C H sing 1.08 N N
89 C37 H48 C H sing 1.08 N N
90 C39 H49 C H sing 1.08 N N
91 C40 H50 C H sing 1.08 N N
92 C41 H51 C H sing 1.08 N N
93 C42 H52 C H sing 1.09 N N
94 C42 H53 C H sing 1.09 N N
95 C42 H54 C H sing 1.09 N N
96 O01 H55 O H sing 0.97 N N
97 O02 H56 O H sing 0.97 N N