Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : I5Y    

Bonds between two atoms of the molecule

Total Number of Bonds: 115


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O12 C11 O C doub 1.21 N N
2 C07 C08 C C doub 1.38 N Y
3 C07 C06 C C sing 1.38 N Y
4 C08 C09 C C sing 1.39 N Y
5 C11 C43 C C sing 1.5 N N
6 C11 N10 C N sing 1.32 N N
7 C42 C43 C C sing 1.53 N N
8 C42 N41 C N sing 1.43 N N
9 C44 N41 C N sing 1.42 N N
10 C44 C45 C C sing 1.53 N N
11 C05 C06 C C sing 1.51 N N
12 C05 C04 C C sing 1.53 N N
13 C06 C14 C C doub 1.38 N Y
14 C09 N10 C N sing 1.39 N N
15 C09 C13 C C doub 1.39 N Y
16 N41 C40 N C sing 1.43 N N
17 C28 C27 C C sing 1.53 N N
18 C28 C29 C C sing 1.51 N N
19 N03 C04 N C sing 1.48 N N
20 N03 C02 N C sing 1.37 N N
21 C45 N38 C N sing 1.5 N N
22 C14 C13 C C sing 1.38 N Y
23 C40 C39 C C sing 1.53 N N
24 O26 C15 O C doub 1.21 N N
25 C04 C15 C C sing 1.51 N N
26 O58 S50 O S doub 1.42 N N
27 C30 C29 C C doub 1.38 N Y
28 C30 C31 C C sing 1.38 N Y
29 C27 C02 C C sing 1.51 N N
30 C27 N49 C N sing 1.47 N N
31 C15 N16 C N sing 1.35 N N
32 C29 C48 C C sing 1.38 N Y
33 C02 O01 C O doub 1.21 N N
34 N38 C39 N C sing 1.5 N N
35 N38 C37 N C sing 1.5 N N
36 C52 C53 C C doub 1.38 N Y
37 C52 C51 C C sing 1.38 N Y
38 C31 C32 C C doub 1.39 N Y
39 C53 C54 C C sing 1.38 N Y
40 N16 C17 N C sing 1.47 N N
41 C48 C47 C C doub 1.38 N Y
42 S50 N49 S N sing 1.66 N N
43 S50 C51 S C sing 1.76 N N
44 S50 O57 S O doub 1.42 N N
45 C51 C56 C C doub 1.38 N Y
46 C37 C36 C C sing 1.53 N N
47 C17 C18 C C sing 1.51 N N
48 C32 C47 C C sing 1.39 N Y
49 C32 N33 C N sing 1.4 N N
50 C54 C55 C C doub 1.38 N Y
51 C56 C55 C C sing 1.38 N Y
52 N33 C34 N C sing 1.35 N N
53 O46 C34 O C doub 1.21 N N
54 C18 C19 C C doub 1.38 N Y
55 C18 C25 C C sing 1.38 N Y
56 C34 C35 C C sing 1.51 N N
57 C36 C35 C C sing 1.53 N N
58 C19 C20 C C sing 1.38 N Y
59 C25 C24 C C doub 1.38 N Y
60 C20 C21 C C doub 1.38 N Y
61 C24 C21 C C sing 1.38 N Y
62 C21 C22 C C sing 1.51 N N
63 C22 N23 C N sing 1.47 N N
64 C13 H131 C H sing 1.08 N N
65 C14 H141 C H sing 1.08 N N
66 C17 H171 C H sing 1.09 N N
67 C17 H172 C H sing 1.09 N N
68 C04 H041 C H sing 1.09 N N
69 C05 H052 C H sing 1.09 N N
70 C05 H051 C H sing 1.09 N N
71 C07 H071 C H sing 1.08 N N
72 C08 H081 C H sing 1.08 N N
73 C19 H191 C H sing 1.08 N N
74 C20 H201 C H sing 1.08 N N
75 C22 H222 C H sing 1.09 N N
76 C22 H221 C H sing 1.09 N N
77 C24 H241 C H sing 1.08 N N
78 C25 H251 C H sing 1.08 N N
79 C27 H271 C H sing 1.09 N N
80 C28 H282 C H sing 1.09 N N
81 C28 H281 C H sing 1.09 N N
82 C30 H301 C H sing 1.08 N N
83 C31 H311 C H sing 1.08 N N
84 C35 H351 C H sing 1.09 N N
85 C35 H352 C H sing 1.09 N N
86 C36 H362 C H sing 1.09 N N
87 C36 H361 C H sing 1.09 N N
88 C37 H371 C H sing 1.09 N N
89 C37 H372 C H sing 1.09 N N
90 C39 H391 C H sing 1.09 N N
91 C39 H392 C H sing 1.09 N N
92 C40 H401 C H sing 1.09 N N
93 C40 H402 C H sing 1.09 N N
94 C42 H421 C H sing 1.09 N N
95 C42 H422 C H sing 1.09 N N
96 C43 H432 C H sing 1.09 N N
97 C43 H431 C H sing 1.09 N N
98 C44 H441 C H sing 1.09 N N
99 C44 H442 C H sing 1.09 N N
100 C45 H451 C H sing 1.09 N N
101 C45 H452 C H sing 1.09 N N
102 C47 H471 C H sing 1.08 N N
103 C48 H481 C H sing 1.08 N N
104 C52 H521 C H sing 1.08 N N
105 C53 H531 C H sing 1.08 N N
106 C54 H541 C H sing 1.08 N N
107 C55 H551 C H sing 1.08 N N
108 C56 H561 C H sing 1.08 N N
109 N03 H031 N H sing 0.97 N N
110 N10 H101 N H sing 0.97 N N
111 N16 H161 N H sing 0.97 N N
112 N23 H232 N H sing 1.01 N N
113 N23 H1 N H sing 1.01 N N
114 N33 H331 N H sing 0.97 N N
115 N49 H491 N H sing 0.97 N N