Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : HK3    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C22 O3 C O sing 1.43 N N
2 O3 C21 O C sing 1.36 N N
3 N2 N1 N N doub 1.28 N N
4 N2 C14 N C sing 1.32 N N
5 C23 C21 C C doub 1.39 N N
6 C23 C24 C C sing 1.38 N N
7 C21 C19 C C sing 1.4 N N
8 N1 C13 N C sing 1.33 N N
9 C14 C24 C C doub 1.48 N N
10 C14 C15 C C sing 1.42 N N
11 C24 C17 C C sing 1.42 N N
12 C19 O2 C O sing 1.36 N N
13 C19 C18 C C doub 1.38 N N
14 C13 C15 C C doub 1.47 N N
15 C13 C10 C C sing 1.47 N N
16 O2 C20 O C sing 1.43 N N
17 C15 C16 C C sing 1.39 N N
18 C17 C18 C C sing 1.4 N N
19 C17 C16 C C doub 1.41 N N
20 C10 C9 C C doub 1.4 N Y
21 C10 C11 C C sing 1.4 N Y
22 C9 C8 C C sing 1.37 N Y
23 C11 C12 C C doub 1.37 N Y
24 C8 C7 C C doub 1.4 N Y
25 C12 C7 C C sing 1.4 N Y
26 C7 C4 C C sing 1.48 N N
27 C4 C5 C C doub 1.4 N Y
28 C4 C3 C C sing 1.4 N Y
29 C5 C6 C C sing 1.38 N Y
30 C3 C2 C C doub 1.38 N Y
31 C6 C1 C C doub 1.39 N Y
32 C2 C1 C C sing 1.39 N Y
33 C1 O1 C O sing 1.36 N N
34 O1 H1 O H sing 0.97 N N
35 C6 H2 C H sing 1.08 N N
36 C5 H3 C H sing 1.08 N N
37 C3 H4 C H sing 1.08 N N
38 C2 H5 C H sing 1.08 N N
39 C12 H6 C H sing 1.08 N N
40 C11 H7 C H sing 1.08 N N
41 C9 H8 C H sing 1.08 N N
42 C8 H9 C H sing 1.08 N N
43 C16 H10 C H sing 1.08 N N
44 C23 H11 C H sing 1.08 N N
45 C22 H222 C H sing 1.09 N N
46 C22 H223 C H sing 1.09 N N
47 C22 H221 C H sing 1.09 N N
48 C18 H12 C H sing 1.08 N N
49 C20 H203 C H sing 1.09 N N
50 C20 H201 C H sing 1.09 N N
51 C20 H202 C H sing 1.09 N N