Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : GHC    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N3 C4 N C sing 1.35 N N
2 C4 C5 C C doub 1.39 N Y
3 C4 S4 C S sing 1.76 N Y
4 C6 C5 C C sing 1.43 N N
5 C5 C1 C C sing 1.45 N Y
6 N1 C6 N C sing 1.35 N N
7 O6 C6 O C doub 1.22 N N
8 C3 C13 C C sing 1.51 N N
9 C13 C29 C C sing 1.53 N N
10 C13 H13 C H sing 1.09 N N
11 C13 H13A C H sing 1.09 N N
12 C2 N1 C N sing 1.36 N N
13 N1 HN1 N H sing 0.97 N N
14 N2 C2 N C sing 1.37 N N
15 N2 HN2 N H sing 0.97 N N
16 N2 HN2A N H sing 0.97 N N
17 S4 C3 S C sing 1.75 N Y
18 C1 C3 C C doub 1.32 N Y
19 C2 N3 C N doub 1.31 N N
20 C29 H29 C H sing 1.09 N N
21 C29 H29A C H sing 1.09 N N
22 C29 H29B C H sing 1.09 N N
23 C1 SAT C S sing 1.76 N N
24 CAZ SAT C S sing 1.76 N N
25 CAJ CAZ C C doub 1.39 N Y
26 CAZ CAI C C sing 1.39 N Y
27 CAL CAJ C C sing 1.37 N Y
28 CAJ HAJ C H sing 1.08 N N
29 CAL CBA C C doub 1.4 N Y
30 CAL HAL C H sing 1.08 N N
31 CAK CAI C C doub 1.37 N Y
32 CAI HAI C H sing 1.08 N N
33 CBA CAK C C sing 1.4 N Y
34 CAK HAK C H sing 1.08 N N
35 CBA CAX C C sing 1.47 N N
36 NAS CAX N C sing 1.35 N N
37 CAX OAE C O doub 1.22 N N
38 CAP NAS C N sing 1.47 N N
39 NAS HNAS N H sing 0.97 N N
40 CBG CAP C C sing 1.53 N N
41 CAW CAP C C sing 1.51 N N
42 CAP HAP C H sing 1.09 N N
43 OAD CAW O C doub 1.21 N N
44 CAW OAG C O sing 1.34 N N
45 OAG HOAG O H sing 0.97 N N
46 CAN CBG C C sing 1.53 N N
47 CBG HBG C H sing 1.09 N N
48 CBG HBGA C H sing 1.09 N N
49 CAV CAN C C sing 1.51 N N
50 CAN HAN C H sing 1.09 N N
51 CAN HANA C H sing 1.09 N N
52 OAC CAV O C doub 1.21 N N
53 CAV OAF C O sing 1.34 N N
54 OAF HOAF O H sing 0.97 N N