Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP2 P O P doub 1.48 N N
2 ON1 N O N sing 1.22 N N
3 OP1 P O P sing 1.61 N N
4 P O5' P O sing 1.61 N N
5 O5' C5' O C sing 1.43 N N
6 N ON2 N O doub 1.22 N N
7 N C5 N C sing 1.48 N N
8 C3' C2' C C sing 1.55 N N
9 C3' O3' C O sing 1.43 N N
10 C3' C4' C C sing 1.54 N N
11 C2' C1' C C sing 1.55 N N
12 C5' C4' C C sing 1.53 N N
13 C6 C5 C C sing 1.39 N N
14 C6 C1 C C doub 1.38 N N
15 C5 C4 C C doub 1.38 N N
16 C4' O4' C O sing 1.44 N N
17 C1' C1 C C sing 1.51 N N
18 C1' O4' C O sing 1.44 N N
19 C1 C2 C C sing 1.4 N N
20 C4 N4 C N sing 1.38 N N
21 C4 N3 C N sing 1.36 N N
22 N3 C2 N C sing 1.35 N N
23 C2 O2 C O doub 1.22 N N
24 P OP3 P O sing 1.61 N N
25 OP1 H1 O H sing 0.97 N N
26 C5' H5'' C H sing 1.09 N N
27 C5' H5' C H sing 1.09 N N
28 C4' H4' C H sing 1.09 N N
29 C1' H1' C H sing 1.09 N N
30 N3 H3 N H sing 0.97 N N
31 C6 H6 C H sing 1.08 N N
32 N4 H42 N H sing 0.97 N N
33 N4 H41 N H sing 0.97 N N
34 C2' H2'' C H sing 1.09 N N
35 C2' H2' C H sing 1.09 N N
36 C3' H3' C H sing 1.09 N N
37 O3' H2 O H sing 0.97 N N
38 OP3 H4 O H sing 0.97 N N