Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DXT    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C4B C C sing 1.53 N N
2 C1 O1 C O doub 1.23 N N
3 C1 C2 C C sing 1.5 N N
4 C2 C21 C C sing 1.47 N N
5 C2 C3 C C doub 1.35 N N
6 O21 C21 O C doub 1.23 N N
7 C21 N21 C N sing 1.37 N N
8 N21 H211 N H sing 1.01 N N
9 N21 H212 N H sing 1.02 N N
10 C3 O3 C O sing 1.39 N N
11 C3 C4 C C sing 1.51 N N
12 O3 HO3 O H sing 0.96 N N
13 C4 H4 C H sing 1.1 N N
14 C4 N4 C N sing 1.47 N N
15 C4 C4A C C sing 1.56 N N
16 N4 C41 N C sing 1.46 N N
17 N4 C42 N C sing 1.46 N N
18 C41 H411 C H sing 1.09 N N
19 C41 H412 C H sing 1.09 N N
20 C41 H413 C H sing 1.09 N N
21 C42 H421 C H sing 1.09 N N
22 C42 H422 C H sing 1.09 N N
23 C42 H423 C H sing 1.09 N N
24 C4A C4B C C sing 1.54 N N
25 C4A H4A C H sing 1.1 N N
26 C4A C5 C C sing 1.55 N N
27 C5 H5 C H sing 1.1 N N
28 C5 O5 C O sing 1.43 N N
29 C5 C5A C C sing 1.55 N N
30 O5 HO5 O H sing 0.97 N N
31 C5A C5B C C sing 1.51 N N
32 C5A H5A C H sing 1.1 N N
33 C5A C6 C C sing 1.57 N N
34 C6 H6 C H sing 1.1 N N
35 C6 C6A C C sing 1.53 N N
36 C6 C61 C C sing 1.54 N N
37 C61 H611 C H sing 1.09 N N
38 C61 H612 C H sing 1.09 N N
39 C61 H613 C H sing 1.09 N N
40 C6A C6B C C sing 1.41 N Y
41 C6A C7 C C doub 1.41 N Y
42 C7 H7 C H sing 1.09 N N
43 C7 C8 C C sing 1.4 N Y
44 C8 H8 C H sing 1.09 N N
45 C8 C9 C C doub 1.39 N Y
46 C9 C10 C C sing 1.39 N Y
47 C9 H9 C H sing 1.09 N N
48 C10 O10 C O sing 1.36 N N
49 C10 C6B C C doub 1.4 N Y
50 O10 H10 O H sing 0.97 N N
51 C6B C11 C C sing 1.48 N N
52 C11 O11 C O doub 1.22 N N
53 C11 C5B C C sing 1.49 N N
54 C5B C12 C C doub 1.35 N N
55 C12 O12 C O sing 1.38 N N
56 C12 C4B C C sing 1.51 N N
57 O12 H12 O H sing 0.96 N N
58 C4B O13 C O sing 1.43 N N
59 O13 H13 O H sing 0.97 N N