Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DND    

Bonds between two atoms of the molecule

Total Number of Bonds: 75


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O13 PA O P doub 1.48 N N
2 O14 PA O P sing 1.61 N N
3 PA O3P P O sing 1.61 N N
4 PA O5B P O sing 1.61 N N
5 O11 PN O P doub 1.48 N N
6 O3P PN O P sing 1.61 N N
7 O5B C5B O C sing 1.43 N N
8 PN O12 P O sing 1.61 N N
9 PN O5D P O sing 1.61 N N
10 C5B C4B C C sing 1.53 N N
11 N7A C8A N C doub 1.3 N Y
12 N7A C5A N C sing 1.36 N Y
13 C8A N9A C N sing 1.36 N Y
14 N6A C6A N C sing 1.38 N N
15 O5D C5D O C sing 1.43 N N
16 C5A C6A C C sing 1.41 N Y
17 C5A C4A C C doub 1.41 N Y
18 O4B C4B O C sing 1.44 N N
19 O4B C1B O C sing 1.44 N N
20 C6A N1A C N doub 1.33 N Y
21 C4B C3B C C sing 1.54 N N
22 N9A C4A N C sing 1.37 N Y
23 N9A C1B N C sing 1.46 N N
24 C5D C4D C C sing 1.53 N N
25 C3D O3D C O sing 1.43 N N
26 C3D C4D C C sing 1.54 N N
27 C3D C2D C C sing 1.55 N N
28 C4A N3A C N sing 1.33 N Y
29 C1B C2B C C sing 1.54 N N
30 N1A C2A N C sing 1.32 N Y
31 C4D O4D C O sing 1.44 N N
32 C2B C3B C C sing 1.55 N N
33 C2B O2B C O sing 1.43 N N
34 C2D O2D C O sing 1.43 N N
35 C2D C1D C C sing 1.55 N N
36 C3B O3B C O sing 1.43 N N
37 N3A C2A N C doub 1.32 N Y
38 O4D C1D O C sing 1.44 N N
39 C1D N1N C N sing 1.47 N N
40 C6N N1N C N doub 1.32 N Y
41 C6N C5N C C sing 1.38 N Y
42 N1N C2N N C sing 1.32 N Y
43 C5N C4N C C doub 1.38 N Y
44 C2N C3N C C doub 1.4 N Y
45 C4N C3N C C sing 1.4 N Y
46 C3N C7N C C sing 1.48 N N
47 C7N O7N C O doub 1.21 N N
48 C7N O8N C O sing 1.35 N N
49 O12 H1 O H sing 0.97 N N
50 C5D H2 C H sing 1.09 N N
51 C5D H3 C H sing 1.09 N N
52 C4D H4 C H sing 1.09 N N
53 C3D H5 C H sing 1.09 N N
54 O3D H6 O H sing 0.97 N N
55 C2D H7 C H sing 1.09 N N
56 O2D H8 O H sing 0.97 N N
57 C1D H9 C H sing 1.09 N N
58 C6N H10 C H sing 1.08 N N
59 C5N H11 C H sing 1.08 N N
60 C4N H12 C H sing 1.08 N N
61 C2N H13 C H sing 1.08 N N
62 O8N H14 O H sing 0.97 N N
63 O14 H15 O H sing 0.97 N N
64 C5B H16 C H sing 1.09 N N
65 C5B H17 C H sing 1.09 N N
66 C4B H18 C H sing 1.09 N N
67 C3B H19 C H sing 1.09 N N
68 O3B H20 O H sing 0.97 N N
69 C2B H21 C H sing 1.09 N N
70 O2B H22 O H sing 0.97 N N
71 C1B H23 C H sing 1.09 N N
72 C2A H24 C H sing 1.08 N N
73 C8A H25 C H sing 1.08 N N
74 N6A H26 N H sing 0.97 N N
75 N6A H27 N H sing 0.97 N N