Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : DM2    

Bonds between two atoms of the molecule

Total Number of Bonds: 72


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C doub 1.38 N Y
2 C1 C20 C C sing 1.39 N Y
3 C1 H1 C H sing 1.08 N N
4 C2 C3 C C sing 1.38 N Y
5 C2 H2 C H sing 1.08 N N
6 C3 C4 C C doub 1.39 N Y
7 C3 H3 C H sing 1.08 N N
8 C4 O4 C O sing 1.36 N N
9 C4 C5 C C sing 1.4 N Y
10 O4 C21 O C sing 1.43 N N
11 C5 C6 C C sing 1.48 N N
12 C5 C20 C C doub 1.41 N Y
13 C6 O6 C O doub 1.22 N N
14 C6 C7 C C sing 1.48 N N
15 C7 C8 C C doub 1.39 N Y
16 C7 C18 C C sing 1.41 N Y
17 C8 O8 C O sing 1.36 N N
18 C8 C9 C C sing 1.4 N Y
19 O8 HO8 O H sing 0.97 N N
20 C9 C10 C C sing 1.51 N N
21 C9 C16 C C doub 1.37 N Y
22 C10 O10 C O sing 1.43 N N
23 C10 C11 C C sing 1.53 N N
24 C10 H10 C H sing 1.09 N N
25 O10 C1' O C sing 1.43 N N
26 C11 C12 C C sing 1.53 N N
27 C11 H111 C H sing 1.09 N N
28 C11 H112 C H sing 1.09 N N
29 C12 O12 C O sing 1.43 N N
30 C12 C13 C C sing 1.51 N N
31 C12 C15 C C sing 1.53 N N
32 O12 HO12 O H sing 0.97 N N
33 C13 O13 C O doub 1.21 N N
34 C13 C14 C C sing 1.51 N N
35 C14 O14 C O sing 1.43 N N
36 C14 H141 C H sing 1.09 N N
37 C14 H142 C H sing 1.09 N N
38 O14 HO14 O H sing 0.97 N N
39 C15 C16 C C sing 1.51 N N
40 C15 H151 C H sing 1.09 N N
41 C15 H152 C H sing 1.09 N N
42 C16 C17 C C sing 1.4 N Y
43 C17 O17 C O sing 1.36 N N
44 C17 C18 C C doub 1.39 N Y
45 O17 HO17 O H sing 0.97 N N
46 C18 C19 C C sing 1.47 N N
47 C19 O19 C O doub 1.22 N N
48 C19 C20 C C sing 1.48 N N
49 C21 H211 C H sing 1.09 N N
50 C21 H212 C H sing 1.09 N N
51 C21 H213 C H sing 1.09 N N
52 C1' C2' C C sing 1.53 N N
53 C1' O5' C O sing 1.43 N N
54 C1' H1' C H sing 1.09 N N
55 C2' C3' C C sing 1.53 N N
56 C2' H2'1 C H sing 1.09 N N
57 C2' H2'2 C H sing 1.09 N N
58 C3' N3' C N sing 1.47 N N
59 C3' C4' C C sing 1.53 N N
60 C3' H3' C H sing 1.09 N N
61 N3' HN'1 N H sing 1.01 N N
62 N3' HN'2 N H sing 1.01 N N
63 C4' O4' C O sing 1.43 N N
64 C4' C5' C C sing 1.53 N N
65 C4' H4' C H sing 1.09 N N
66 O4' HO4' O H sing 0.97 N N
67 C5' O5' C O sing 1.42 N N
68 C5' C6' C C sing 1.53 N N
69 C5' H5' C H sing 1.09 N N
70 C6' H6'1 C H sing 1.09 N N
71 C6' H6'2 C H sing 1.09 N N
72 C6' H6'3 C H sing 1.09 N N