Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : CDP    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3B PB O P sing 1.61 N N
2 PB O1B P O doub 1.48 N N
3 PB O2B P O sing 1.61 N N
4 PB O3A P O sing 1.61 N N
5 O3A PA O P sing 1.61 N N
6 PA O1A P O doub 1.48 N N
7 PA O2A P O sing 1.61 N N
8 PA O5' P O sing 1.61 N N
9 O5' C5' O C sing 1.43 N N
10 C5' C4' C C sing 1.53 N N
11 C5' H5'1 C H sing 1.09 N N
12 C5' H5'2 C H sing 1.09 N N
13 C4' O4' C O sing 1.44 N N
14 C4' C3' C C sing 1.54 N N
15 C4' H4' C H sing 1.09 N N
16 O4' C1' O C sing 1.44 N N
17 C3' O3' C O sing 1.43 N N
18 C3' C2' C C sing 1.55 N N
19 C3' H3' C H sing 1.09 N N
20 O3' HA O H sing 0.97 N N
21 C2' O2' C O sing 1.43 N N
22 C2' C1' C C sing 1.55 N N
23 C2' H2' C H sing 1.09 N N
24 O2' HB O H sing 0.97 N N
25 C1' N1 C N sing 1.46 N N
26 C1' H1' C H sing 1.09 N N
27 N1 C2 N C sing 1.35 N N
28 N1 C6 N C sing 1.36 N N
29 C2 O2 C O doub 1.22 N N
30 C2 N3 C N sing 1.33 N N
31 N3 C4 N C doub 1.33 N N
32 C4 N4 C N sing 1.38 N N
33 C4 C5 C C sing 1.41 N N
34 N4 H4N1 N H sing 0.97 N N
35 N4 H4N2 N H sing 0.97 N N
36 C5 C6 C C doub 1.35 N N
37 C5 H5 C H sing 1.08 N N
38 C6 H6 C H sing 1.08 N N
39 HO1 O2A H O sing 0.97 N N
40 HO2 O2B H O sing 0.97 N N
41 HO3 O3B H O sing 0.97 N N