Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : AGH    

Bonds between two atoms of the molecule

Total Number of Bonds: 159


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.53 N N
2 C1 O1A C O sing 1.43 N N
3 C1 H11 C H sing 1.09 N N
4 C1 H12 C H sing 1.09 N N
5 C2 C3 C C sing 1.53 N N
6 C2 N2 C N sing 1.46 N N
7 C2 H2 C H sing 1.09 N N
8 C3 C4 C C sing 1.53 N N
9 C3 O3 C O sing 1.43 N N
10 C3 H5 C H sing 1.09 N N
11 C4 C5 C C sing 1.53 N N
12 C4 O4 C O sing 1.43 N N
13 C4 H6 C H sing 1.09 N N
14 C5 C6 C C sing 1.53 N N
15 C5 H51 C H sing 1.09 N N
16 C5 H52 C H sing 1.09 N N
17 C6 C7 C C sing 1.53 N N
18 C6 H61 C H sing 1.09 N N
19 C6 H62 C H sing 1.09 N N
20 O3 HO3 O H sing 0.97 N N
21 C18 C17 C C sing 1.53 N N
22 C18 H181 C H sing 1.09 N N
23 C18 H182 C H sing 1.09 N N
24 C18 H183 C H sing 1.09 N N
25 C17 C16 C C sing 1.53 N N
26 C17 H171 C H sing 1.09 N N
27 C17 H172 C H sing 1.09 N N
28 C16 C15 C C sing 1.53 N N
29 C16 H161 C H sing 1.09 N N
30 C16 H162 C H sing 1.09 N N
31 C15 C14 C C sing 1.53 N N
32 C15 H151 C H sing 1.09 N N
33 C15 H152 C H sing 1.09 N N
34 C14 C13 C C sing 1.53 N N
35 C14 H141 C H sing 1.09 N N
36 C14 H142 C H sing 1.09 N N
37 C13 C12 C C sing 1.53 N N
38 C13 H131 C H sing 1.09 N N
39 C13 H132 C H sing 1.09 N N
40 C12 C11 C C sing 1.53 N N
41 C12 H121 C H sing 1.09 N N
42 C12 H122 C H sing 1.09 N N
43 C11 C10 C C sing 1.53 N N
44 C11 H111 C H sing 1.09 N N
45 C11 H112 C H sing 1.09 N N
46 C10 C9 C C sing 1.53 N N
47 C10 H101 C H sing 1.09 N N
48 C10 H102 C H sing 1.09 N N
49 C9 C8 C C sing 1.53 N N
50 C9 H91 C H sing 1.09 N N
51 C9 H92 C H sing 1.09 N N
52 C8 C7 C C sing 1.53 N N
53 C8 H81 C H sing 1.09 N N
54 C8 H82 C H sing 1.09 N N
55 C7 H71 C H sing 1.09 N N
56 C7 H72 C H sing 1.09 N N
57 O4 HO4 O H sing 0.97 N N
58 O1A C1A O C sing 1.43 N N
59 C1A O6A C O sing 1.43 N N
60 C1A C2A C C sing 1.53 N N
61 C1A H1A C H sing 1.09 N N
62 O6A C5M O C sing 1.43 N N
63 C5M C6A C C sing 1.53 N N
64 C5M C4A C C sing 1.53 N N
65 C5M H5M C H sing 1.09 N N
66 C6A O5A C O sing 1.43 N N
67 C6A H6A1 C H sing 1.09 N N
68 C6A H6A2 C H sing 1.09 N N
69 O5A H5A O H sing 0.97 N N
70 C4A O4A C O sing 1.43 N N
71 C4A C3A C C sing 1.53 N N
72 C4A H4A C H sing 1.09 N N
73 O4A H1 O H sing 0.97 N N
74 C3A O3A C O sing 1.43 N N
75 C3A C2A C C sing 1.53 N N
76 C3A H3A C H sing 1.09 N N
77 O3A H3 O H sing 0.97 N N
78 C2A O2A C O sing 1.43 N N
79 C2A H2A C H sing 1.09 N N
80 O2A H4 O H sing 0.97 N N
81 N2 CAA N C sing 1.35 N N
82 N2 HN2 N H sing 0.97 N N
83 CAA OAA C O doub 1.21 N N
84 CAA CAB C C sing 1.51 N N
85 CAB CAC C C sing 1.53 N N
86 CAB HAB1 C H sing 1.09 N N
87 CAB HAB2 C H sing 1.09 N N
88 CAC CAD C C sing 1.53 N N
89 CAC HAC1 C H sing 1.09 N N
90 CAC HAC2 C H sing 1.09 N N
91 CAD CAE C C sing 1.53 N N
92 CAD HAD1 C H sing 1.09 N N
93 CAD HAD2 C H sing 1.09 N N
94 CAE CAF C C sing 1.53 N N
95 CAE HAE1 C H sing 1.09 N N
96 CAE HAE2 C H sing 1.09 N N
97 CAF CAG C C sing 1.53 N N
98 CAF HAF1 C H sing 1.09 N N
99 CAF HAF2 C H sing 1.09 N N
100 CAG CAH C C sing 1.53 N N
101 CAG HAG1 C H sing 1.09 N N
102 CAG HAG2 C H sing 1.09 N N
103 CAH CAI C C sing 1.53 N N
104 CAH HAH1 C H sing 1.09 N N
105 CAH HAH2 C H sing 1.09 N N
106 CAI CAJ C C sing 1.53 N N
107 CAI HAI1 C H sing 1.09 N N
108 CAI HAI2 C H sing 1.09 N N
109 CAJ CAK C C sing 1.53 N N
110 CAJ HAJ1 C H sing 1.09 N N
111 CAJ HAJ2 C H sing 1.09 N N
112 CAK CAL C C sing 1.53 N N
113 CAK HAK1 C H sing 1.09 N N
114 CAK HAK2 C H sing 1.09 N N
115 CAL CAM C C sing 1.53 N N
116 CAL HAL1 C H sing 1.09 N N
117 CAL HAL2 C H sing 1.09 N N
118 CAM CAN C C sing 1.53 N N
119 CAM HAM1 C H sing 1.09 N N
120 CAM HAM2 C H sing 1.09 N N
121 CAN CAO C C sing 1.53 N N
122 CAN HAN1 C H sing 1.09 N N
123 CAN HAN2 C H sing 1.09 N N
124 CAO CAP C C sing 1.53 N N
125 CAO HAO1 C H sing 1.09 N N
126 CAO HAO2 C H sing 1.09 N N
127 CAP CAQ C C sing 1.53 N N
128 CAP HAP1 C H sing 1.09 N N
129 CAP HAP2 C H sing 1.09 N N
130 CAQ CAR C C sing 1.53 N N
131 CAQ HAQ1 C H sing 1.09 N N
132 CAQ HAQ2 C H sing 1.09 N N
133 CAR CAS C C sing 1.53 N N
134 CAR HAR1 C H sing 1.09 N N
135 CAR HAR2 C H sing 1.09 N N
136 CAS CAT C C sing 1.53 N N
137 CAS HAS1 C H sing 1.09 N N
138 CAS HAS2 C H sing 1.09 N N
139 CAT CAU C C sing 1.53 N N
140 CAT HAT1 C H sing 1.09 N N
141 CAT HAT2 C H sing 1.09 N N
142 CAU CAV C C sing 1.53 N N
143 CAU HAU1 C H sing 1.09 N N
144 CAU HAU2 C H sing 1.09 N N
145 CAV CAW C C sing 1.53 N N
146 CAV HAV1 C H sing 1.09 N N
147 CAV HAV2 C H sing 1.09 N N
148 CAW CAX C C sing 1.53 N N
149 CAW HAW1 C H sing 1.09 N N
150 CAW HAW2 C H sing 1.09 N N
151 CAX CAY C C sing 1.53 N N
152 CAX HAX1 C H sing 1.09 N N
153 CAX HAX2 C H sing 1.09 N N
154 CAY CAZ C C sing 1.53 N N
155 CAY HAY1 C H sing 1.09 N N
156 CAY HAY2 C H sing 1.09 N N
157 CAZ HAZ1 C H sing 1.09 N N
158 CAZ HAZ2 C H sing 1.09 N N
159 CAZ HAZ3 C H sing 1.09 N N