Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 9XR    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3D C3D O C sing 1.43 N N
2 C4D O4D C O sing 1.44 N N
3 C4D C3D C C sing 1.55 N N
4 C4D C5D C C sing 1.53 N N
5 O4D C1D O C sing 1.43 N N
6 C3D C2D C C sing 1.55 N N
7 O2D C2D O C sing 1.43 N N
8 C5D O5D C O sing 1.43 N N
9 O5D PN O P sing 1.61 N N
10 N8N C1D N C sing 1.46 N N
11 N8N C1N N C sing 1.4 N N
12 C2D C1D C C sing 1.54 N N
13 C1N C6N C C doub 1.39 N Y
14 C1N C2N C C sing 1.39 N Y
15 C6N C5N C C sing 1.38 N Y
16 O2N PN O P doub 1.48 N N
17 C2N C3N C C doub 1.39 N Y
18 PN O3 P O sing 1.61 N N
19 PN O1N P O sing 1.61 N N
20 O3 PA O P sing 1.61 N N
21 C5B C4B C C sing 1.53 N N
22 C5B O5B C O sing 1.43 N N
23 C5N C4N C C doub 1.38 N Y
24 C3N C4N C C sing 1.4 N Y
25 C3N C7N C C sing 1.48 N N
26 C4B O4B C O sing 1.44 N N
27 C4B C3B C C sing 1.54 N N
28 C7N N7N C N sing 1.35 N N
29 C7N O7N C O doub 1.22 N N
30 O2A PA O P doub 1.48 N N
31 O5B PA O P sing 1.61 N N
32 PA O1A P O sing 1.61 N N
33 O3B C3B O C sing 1.43 N N
34 O4B C1B O C sing 1.44 N N
35 O2B C2B O C sing 1.43 N N
36 C3B C2B C C sing 1.55 N N
37 C2B C1B C C sing 1.55 N N
38 C1B N9A C N sing 1.47 N N
39 N9A C8A N C sing 1.36 N Y
40 N9A C4A N C sing 1.37 N Y
41 C8A N7A C N doub 1.3 N Y
42 C4A N3A C N doub 1.33 N Y
43 C4A C5A C C sing 1.4 N Y
44 N3A C2A N C sing 1.32 N Y
45 N7A C5A N C sing 1.36 N Y
46 C5A C6A C C doub 1.41 N Y
47 C2A N1A C N doub 1.32 N Y
48 C6A N1A C N sing 1.33 N Y
49 C6A N6A C N sing 1.38 N N
50 N7N H71N N H sing 0.97 N N
51 N7N H72N N H sing 0.97 N N
52 C2N H2N C H sing 1.08 N N
53 C4N H4N C H sing 1.08 N N
54 C5N H5N C H sing 1.08 N N
55 C6N H6N1 C H sing 1.08 N N
56 C1D H1D C H sing 1.09 N N
57 C2D H2D C H sing 1.09 N N
58 O2D HO2N O H sing 0.97 N N
59 C3D H3D C H sing 1.09 N N
60 O3D HO3N O H sing 0.97 N N
61 C4D H4D C H sing 1.09 N N
62 C5D H51N C H sing 1.09 N N
63 C5D H52N C H sing 1.09 N N
64 O1N H1 O H sing 0.97 N N
65 O1A H2 O H sing 0.97 N N
66 C5B H52A C H sing 1.09 N N
67 C5B H51A C H sing 1.09 N N
68 C4B H4B C H sing 1.09 N N
69 C3B H3B C H sing 1.09 N N
70 O3B HO3A O H sing 0.97 N N
71 C2B H2B C H sing 1.09 N N
72 O2B HO2A O H sing 0.97 N N
73 C1B H1B C H sing 1.09 N N
74 C8A H8A C H sing 1.08 N N
75 C2A H2A C H sing 1.08 N N
76 N6A H61A N H sing 0.97 N N
77 N6A H62A N H sing 0.97 N N
78 N8N HN8N N H sing 0.97 N N