Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8K1    

Bonds between two atoms of the molecule

Total Number of Bonds: 95


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C28 C27 C C sing 1.53 N N
2 C27 C29 C C sing 1.56 N N
3 C27 C26 C C sing 1.56 N N
4 C27 O5 C O sing 1.45 N N
5 C29 C21 C C sing 1.56 N N
6 C26 C22 C C sing 1.56 N N
7 C26 C25 C C sing 1.56 N N
8 O5 C24 O C sing 1.46 N N
9 C22 C21 C C sing 1.54 N N
10 O4 C20 O C sing 1.43 N N
11 C25 C24 C C sing 1.55 N N
12 C21 C20 C C sing 1.51 N N
13 C21 C23 C C sing 1.52 N N
14 C24 C23 C C sing 1.53 N N
15 N C N C sing 1.38 N N
16 C20 C19 C C sing 1.53 N N
17 N1 C N C doub 1.33 N Y
18 N1 C1 N C sing 1.32 N Y
19 C23 C16 C C sing 1.52 N N
20 C C3 C C sing 1.41 N Y
21 C1 N2 C N doub 1.32 N Y
22 C19 C18 C C sing 1.53 N N
23 C16 C18 C C sing 1.53 N N
24 C16 C17 C C sing 1.52 N N
25 C16 C15 C C sing 1.54 N N
26 C3 C2 C C doub 1.41 N Y
27 C3 N3 C N sing 1.35 N Y
28 N2 C2 N C sing 1.33 N Y
29 C18 C11 C C sing 1.51 N N
30 C15 C14 C C sing 1.53 N N
31 C2 N4 C N sing 1.37 N Y
32 N3 C4 N C doub 1.3 N Y
33 C11 C12 C C sing 1.55 N N
34 C11 C13 C C sing 1.53 N N
35 C11 C10 C C sing 1.51 N N
36 O6 C10 O C doub 1.21 N N
37 C14 C13 C C sing 1.52 N N
38 N4 C4 N C sing 1.36 N Y
39 N4 C5 N C sing 1.46 N N
40 C10 O3 C O sing 1.34 N N
41 C5 O9 C O sing 1.44 N N
42 C5 C6 C C sing 1.54 N N
43 O9 C8 O C sing 1.44 N N
44 O3 P O P sing 1.61 N N
45 C6 O C O sing 1.43 N N
46 C6 C7 C C sing 1.55 N N
47 O7 P O P doub 1.48 N N
48 O2 P O P sing 1.61 N N
49 O2 C9 O C sing 1.43 N N
50 P O8 P O sing 1.61 N N
51 C8 C9 C C sing 1.53 N N
52 C8 C7 C C sing 1.54 N N
53 C7 O1 C O sing 1.43 N N
54 C12 H1 C H sing 1.09 N N
55 C12 H2 C H sing 1.09 N N
56 C12 H3 C H sing 1.09 N N
57 C13 H4 C H sing 1.1 N N
58 C13 H5 C H sing 1.09 N N
59 C14 H6 C H sing 1.08 N N
60 C14 H7 C H sing 1.1 N N
61 C15 H8 C H sing 1.09 N N
62 C15 H9 C H sing 1.09 N N
63 C18 H10 C H sing 1.12 N N
64 C19 H11 C H sing 1.09 N N
65 C19 H12 C H sing 1.09 N N
66 C20 H13 C H sing 1.09 N N
67 C22 H14 C H sing 1.1 N N
68 C22 H15 C H sing 1.08 N N
69 C23 H16 C H sing 1.13 N N
70 C25 H17 C H sing 1.1 N N
71 C25 H18 C H sing 1.08 N N
72 C28 H19 C H sing 1.09 N N
73 C28 H20 C H sing 1.09 N N
74 C28 H21 C H sing 1.09 N N
75 O8 H22 O H sing 0.97 N N
76 C9 H23 C H sing 1.09 N N
77 C9 H24 C H sing 1.09 N N
78 C8 H25 C H sing 1.09 N N
79 C7 H26 C H sing 1.09 N N
80 O1 H27 O H sing 0.97 N N
81 C6 H28 C H sing 1.09 N N
82 O H29 O H sing 0.97 N N
83 C5 H30 C H sing 1.09 N N
84 C1 H31 C H sing 1.08 N N
85 C4 H32 C H sing 1.08 N N
86 N H33 N H sing 0.97 N N
87 N H34 N H sing 0.97 N N
88 O4 H35 O H sing 0.97 N N
89 C29 H36 C H sing 1.09 N N
90 C29 H37 C H sing 1.09 N N
91 C26 H38 C H sing 1.09 N N
92 C24 H39 C H sing 1.09 N N
93 C17 H40 C H sing 1.09 N N
94 C17 H41 C H sing 1.09 N N
95 C17 H42 C H sing 1.09 N N