Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8I9    

Bonds between two atoms of the molecule

Total Number of Bonds: 124


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C49 C50 C C sing 1.53 N N
2 C49 C48 C C sing 1.53 N N
3 C50 C51 C C sing 1.53 N N
4 C48 C47 C C sing 1.53 N N
5 C47 C46 C C sing 1.53 N N
6 C51 C52 C C sing 1.53 N N
7 C46 C45 C C sing 1.53 N N
8 C52 C53 C C sing 1.53 N N
9 C53 C54 C C sing 1.53 N N
10 C45 C44 C C sing 1.53 N N
11 C54 C55 C C sing 1.53 N N
12 S42 C41 S C sing 1.81 N N
13 S42 C43 S C sing 1.71 N N
14 C41 C40 C C sing 1.53 N N
15 C40 N39 C N sing 1.47 N N
16 C44 C43 C C sing 1.51 N N
17 C43 O56 C O doub 1.21 N N
18 N39 C38 N C sing 1.35 N N
19 C38 O57 C O doub 1.21 N N
20 C38 C37 C C sing 1.51 N N
21 C37 C36 C C sing 1.53 N N
22 C36 N35 C N sing 1.47 N N
23 O58 C34 O C doub 1.21 N N
24 C34 N35 C N sing 1.35 N N
25 C34 C32 C C sing 1.51 N N
26 C31 C29 C C sing 1.53 N N
27 C32 C29 C C sing 1.53 N N
28 C32 O33 C O sing 1.43 N N
29 C29 C30 C C sing 1.53 N N
30 C29 C28 C C sing 1.53 N N
31 O27 C28 O C sing 1.43 N N
32 O27 P25 O P sing 1.61 N N
33 O59 P25 O P doub 1.48 N N
34 N01 C02 N C sing 1.38 N N
35 P25 O24 P O sing 1.61 N N
36 P25 O26 P O sing 1.61 N N
37 N08 C07 N C sing 1.35 N Y
38 N08 C09 N C doub 1.3 N Y
39 O24 P23 O P sing 1.61 N N
40 C02 C07 C C doub 1.4 N Y
41 C02 N03 C N sing 1.33 N Y
42 C07 C06 C C sing 1.4 N Y
43 C09 N10 C N sing 1.36 N Y
44 N03 C04 N C doub 1.32 N Y
45 C06 N10 C N sing 1.37 N Y
46 C06 N05 C N doub 1.33 N Y
47 N10 C11 N C sing 1.46 N N
48 P23 O22 P O sing 1.61 N N
49 P23 O61 P O doub 1.48 N N
50 P23 O60 P O sing 1.61 N N
51 O22 C21 O C sing 1.43 N N
52 C04 N05 C N sing 1.32 N Y
53 O62 C11 O C sing 1.44 N N
54 O62 C20 O C sing 1.44 N N
55 C21 C20 C C sing 1.53 N N
56 C11 C12 C C sing 1.54 N N
57 C20 C14 C C sing 1.54 N N
58 C12 C14 C C sing 1.55 N N
59 C12 O13 C O sing 1.43 N N
60 C14 O15 C O sing 1.43 N N
61 O15 P16 O P sing 1.61 N N
62 P16 O18 P O doub 1.48 N N
63 P16 O17 P O sing 1.61 N N
64 P16 O19 P O sing 1.61 N N
65 C20 H201 C H sing 1.09 N N
66 C21 H212 C H sing 1.09 N N
67 C21 H211 C H sing 1.09 N N
68 C28 H282 C H sing 1.09 N N
69 C28 H281 C H sing 1.09 N N
70 C04 H041 C H sing 1.08 N N
71 C09 H091 C H sing 1.08 N N
72 C11 H111 C H sing 1.09 N N
73 C12 H121 C H sing 1.09 N N
74 C14 H141 C H sing 1.09 N N
75 C30 H303 C H sing 1.09 N N
76 C30 H301 C H sing 1.09 N N
77 C30 H302 C H sing 1.09 N N
78 C31 H313 C H sing 1.09 N N
79 C31 H311 C H sing 1.09 N N
80 C31 H312 C H sing 1.09 N N
81 C32 H321 C H sing 1.09 N N
82 C36 H361 C H sing 1.09 N N
83 C36 H362 C H sing 1.09 N N
84 C37 H372 C H sing 1.09 N N
85 C37 H371 C H sing 1.09 N N
86 C40 H401 C H sing 1.09 N N
87 C40 H402 C H sing 1.09 N N
88 C41 H412 C H sing 1.09 N N
89 C41 H411 C H sing 1.09 N N
90 C44 H442 C H sing 1.09 N N
91 C44 H441 C H sing 1.09 N N
92 C45 H451 C H sing 1.09 N N
93 C45 H452 C H sing 1.09 N N
94 C46 H462 C H sing 1.09 N N
95 C46 H461 C H sing 1.09 N N
96 C47 H471 C H sing 1.09 N N
97 C47 H472 C H sing 1.09 N N
98 C48 H481 C H sing 1.09 N N
99 C48 H482 C H sing 1.09 N N
100 C49 H492 C H sing 1.09 N N
101 C49 H491 C H sing 1.09 N N
102 C50 H501 C H sing 1.09 N N
103 C50 H502 C H sing 1.09 N N
104 C51 H512 C H sing 1.09 N N
105 C51 H511 C H sing 1.09 N N
106 C52 H521 C H sing 1.09 N N
107 C52 H522 C H sing 1.09 N N
108 C53 H532 C H sing 1.09 N N
109 C53 H531 C H sing 1.09 N N
110 C54 H542 C H sing 1.09 N N
111 C54 H541 C H sing 1.09 N N
112 C55 H552 C H sing 1.09 N N
113 C55 H553 C H sing 1.09 N N
114 C55 H551 C H sing 1.09 N N
115 N01 H011 N H sing 0.97 N N
116 N01 H012 N H sing 0.97 N N
117 N35 H351 N H sing 0.97 N N
118 N39 H391 N H sing 0.97 N N
119 O13 H131 O H sing 0.97 N N
120 O17 H1 O H sing 0.97 N N
121 O19 H2 O H sing 0.97 N N
122 O26 H3 O H sing 0.97 N N
123 O33 H331 O H sing 0.97 N N
124 O60 H4 O H sing 0.97 N N