Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 5K9    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C22 C17 C C sing 1.53 N N
2 C01 C02 C C sing 1.53 N N
3 C21 C17 C C sing 1.53 N N
4 O18 C17 O C sing 1.42 N N
5 O18 C19 O C sing 1.36 N N
6 C17 C11 C C sing 1.53 N N
7 C02 C03 C C sing 1.53 N N
8 C20 C19 C C doub 1.39 N Y
9 C20 C06 C C sing 1.38 N Y
10 C03 C04 C C sing 1.53 N N
11 C19 C09 C C sing 1.39 N Y
12 C05 C04 C C sing 1.53 N N
13 C05 C06 C C sing 1.51 N N
14 C11 C12 C C sing 1.53 N N
15 C11 C10 C C sing 1.53 N N
16 C06 C07 C C doub 1.38 N Y
17 C12 C13 C C sing 1.53 N N
18 C09 C10 C C sing 1.5 N N
19 C09 C08 C C doub 1.39 N Y
20 C10 C15 C C sing 1.53 N N
21 C07 C08 C C sing 1.39 N Y
22 C08 O23 C O sing 1.36 N N
23 C13 C14 C C sing 1.53 N N
24 C15 C14 C C sing 1.53 N N
25 C14 C16 C C sing 1.53 N N
26 C10 H1 C H sing 1.09 N N
27 C13 H132 C H sing 1.09 N N
28 C13 H131 C H sing 1.09 N N
29 C15 H152 C H sing 1.09 N N
30 C15 H151 C H sing 1.09 N N
31 C20 H201 C H sing 1.08 N N
32 C21 H213 C H sing 1.09 N N
33 C21 H211 C H sing 1.09 N N
34 C21 H212 C H sing 1.09 N N
35 C22 H221 C H sing 1.09 N N
36 C22 H223 C H sing 1.09 N N
37 C22 H222 C H sing 1.09 N N
38 C01 H013 C H sing 1.09 N N
39 C01 H011 C H sing 1.09 N N
40 C01 H012 C H sing 1.09 N N
41 C02 H021 C H sing 1.09 N N
42 C02 H022 C H sing 1.09 N N
43 C03 H032 C H sing 1.09 N N
44 C03 H031 C H sing 1.09 N N
45 C04 H042 C H sing 1.09 N N
46 C04 H041 C H sing 1.09 N N
47 C05 H052 C H sing 1.09 N N
48 C05 H051 C H sing 1.09 N N
49 C07 H071 C H sing 1.08 N N
50 C11 H2 C H sing 1.09 N N
51 C12 H121 C H sing 1.09 N N
52 C12 H122 C H sing 1.09 N N
53 C14 H141 C H sing 1.09 N N
54 C16 H163 C H sing 1.09 N N
55 C16 H162 C H sing 1.09 N N
56 C16 H161 C H sing 1.09 N N
57 O23 H231 O H sing 0.97 N N